SNP Report

Basic Info
Name rs41350144 dbSNP Ensembl
Location chr1:61350127 - 61350127(1)
Variant Alleles A/T
Ancestral Allele A
Minor Allele T
Minor Allele Frequence 0.489018
Functional Annotation intron_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript intron_variant(ENST00000371184, ENST00000371185, ENST00000371187, ENST00000371189, ENST00000371191, ENST00000403491, ENST00000407417, ENST00000479364, ENST00000485903); non_coding_transcript_variant(ENST00000479364); upstream_gene_variant(ENST00000482020)
No. of Studies 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Lee, H. J., 2013 P-value=3.08E-07, Permutated P-value=1.00E-06, OR=2.269, Con...... P-value=3.08E-07, Permutated P-value=1.00E-06, OR=2.269, Confidence Interval (CI)=1.66-3.11 More... The most significant association was for rs41350144, which l...... The most significant association was for rs41350144, which lies within an intron of NF1A gene on 1p31. More... Trend

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
NFIA nuclear factor I/A 1p31.3-p31.2 1(0/1/0)
NFIX nuclear factor I/X (CCAAT-binding transcription factor) 19p13.3 4(0/3/1)

SNPs in LD with rs41350144 (count: 0) View in gBrowse (chr1:61350127..61350127 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)