SNP Report

Basic Info

Name	rs41350144 dbSNP Ensembl
Location	chr1:61350127 - 61350127(1)
Variant Alleles	A/T
Ancestral Allele	A
Minor Allele	T
Minor Allele Frequence	0.489018
Functional Annotation	intron_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript	intron_variant(ENST00000371184, ENST00000371185, ENST00000371187, ENST00000371189, ENST00000371191, ENST00000403491, ENST00000407417, ENST00000479364, ENST00000485903); non_coding_transcript_variant(ENST00000479364); upstream_gene_variant(ENST00000482020)
No. of Studies	1 (Positive: 0; Negative: 0; Trend: 1)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Lee, H. J., 2013			P-value=3.08E-07, Permutated P-value=1.00E-06, OR=2.269, Con...... P-value=3.08E-07, Permutated P-value=1.00E-06, OR=2.269, Confidence Interval (CI)=1.66-3.11 More...	The most significant association was for rs41350144, which l...... The most significant association was for rs41350144, which lies within an intron of NF1A gene on 1p31. More...	Trend

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
NFIA	nuclear factor I/A	1p31.3-p31.2	1(0/1/0)
NFIX	nuclear factor I/X (CCAAT-binding transcription factor)	19p13.3	4(0/3/1)

SNPs in LD with rs41350144 (count: 0) View in gBrowse (chr1:61350127..61350127 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)