BDgene

SNP Report

Basic Info
Name rs41279104 dbSNP Ensembl
Location chr12:117439680 - 117439680(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.104433
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000549189); non_coding_transcript_variant(ENST00000549189)
No. of Studies 2 (Positive: 0; Negative: 2; Trend: 0)
Source Literature
Overlap with SZ? YES
Overlap with MDD? YES

SNP related studies (count: 2)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Silberberg, G.,2010 G/A Association analysis: X2=2.9, genotypic P-value =...... Association analysis: X2=2.9, genotypic P-value = 0.58 More... No significant association was observed in BD. No significant association was observed in BD. Negative
Okumura, T., 2010 C/T genotype test P-value = 0.638, allele test P-value = 0.741. genotype test P-value = 0.638, allele test P-value = 0.741. no association was observed. no association was observed. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
NOS1 nitric oxide synthase 1 (neuronal) 12q24.22 8(2/5/1)

SNPs in LD with rs41279104 (count: 0) View in gBrowse (chr12:117439680..117439680 )

Overlap with SZ from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Silberberg, G.,2010 Association analysis:X2=2.9, genotypic P-value = 0.58 No significant association was observed. Negative

Overlap with MDD from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Okumura, T., 2010 genotype test P-value = 0.787, allele test P-value = 0.531. no association was observed. Negative