SNP Report

Basic Info

Name	rs41279104 dbSNP Ensembl
Location	chr12:117439680 - 117439680(1)
Variant Alleles	C/T
Ancestral Allele	C
Minor Allele	T
Minor Allele Frequence	0.104433
Functional Annotation	intron_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000549189); non_coding_transcript_variant(ENST00000549189)
No. of Studies	2 (Positive: 0; Negative: 2; Trend: 0)
Source	Literature
Overlap with SZ?	YES
Overlap with MDD?	YES

SNP related studies (count: 2)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Silberberg, G.,2010	G/A		Association analysis: X²=2.9, genotypic P-value =...... Association analysis: X²=2.9, genotypic P-value = 0.58 More...	No significant association was observed in BD. No significant association was observed in BD.	Negative
Okumura, T., 2010	C/T		genotype test P-value = 0.638, allele test P-value = 0.741. genotype test P-value = 0.638, allele test P-value = 0.741.	no association was observed. no association was observed.	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
NOS1	nitric oxide synthase 1 (neuronal)	12q24.22	8(2/5/1)

SNPs in LD with rs41279104 (count: 0) View in gBrowse (chr12:117439680..117439680 )

Overlap with SZ from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
Silberberg, G.,2010	Association analysis:X²=2.9, genotypic P-value = 0.58	No significant association was observed.	Negative

Overlap with MDD from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
Okumura, T., 2010	genotype test P-value = 0.787, allele test P-value = 0.531.	no association was observed.	Negative