SNP Report

Basic Info

Name	rs3108237 dbSNP Ensembl
Location	chr4:185190957 - 185190957(1)
Variant Alleles	G/A
Ancestral Allele	A
Minor Allele	G
Minor Allele Frequence	0.459065
Functional Annotation	3_prime_UTR_variant; synonymous_variant.
Consequence to Transcript	3_prime_UTR_variant(ENST00000296775); synonymous_variant(ENST00000458385, ENST00000503223, ENST00000514798)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Blair, I. P.,2005	T/C		X² goodness of fit tests: MAF=0.45, Genotype P-va...... X² goodness of fit tests: MAF=0.45, Genotype P-value = 0.7, Allele P-value = 0.41 More...	No significant association was observed. No significant association was observed.	Negative

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
KIAA1430	cilia and flagella associated protein 97	4q35.1	Literature-origin; Mapped by Literature SNP
CFAP97	cilia and flagella associated protein 97	4q35.1	1(0/1/0)

SNPs in LD with rs3108237 (count: 17) View in gBrowse (chr4:185138739..185200313 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs11729626	downstream_gene_variant	0.841[TSI]
rs6850094	downstream_gene_variant; intron_variant	1.0[CEU]; 1.0[TSI]
rs3112879	intron_variant	1.0[CEU]
rs11132282	intron_variant; non_coding_transcript_variant	1.0[CEU]
rs4318688	3_prime_UTR_variant	0.889[CEU]
rs3108275	intron_variant; upstream_gene_variant	0.961[CEU]
rs6839413	3_prime_UTR_variant; intron_variant	1.0[CEU]; 1.0[TSI]
rs6814673	3_prime_UTR_variant; intron_variant	0.961[CEU]; 0.977[TSI]
rs1534140	intron_variant	0.961[CEU]
rs6849724	intron_variant	0.961[CEU]; 0.977[TSI]
rs12506141	upstream_gene_variant	0.804[TSI]
rs3108272	intron_variant; upstream_gene_variant	0.961[CEU]; 0.977[TSI]
rs28526041	intron_variant	0.961[CEU]; 0.977[TSI]
rs3108247	intron_variant	0.957[CEU]
rs6831793	intron_variant; upstream_gene_variant	0.925[CEU]; 0.87[TSI]
rs7682368	intron_variant; non_coding_transcript_variant	1.0[CEU]; 0.977[TSI]
rs11730968	intron_variant; non_coding_transcript_variant	1.0[CEU]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)