BDgene

SNP Report

Basic Info
Name rs2839223 dbSNP Ensembl
Location chr21:46357148 - 46357148(1)
Variant Alleles G/A
Ancestral Allele A
Minor Allele G
Minor Allele Frequence 0.151358
Functional Annotation downstream_gene_variant; missense_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant.
Polyphen Annotation: benign(ENST00000359568)
SIFT Annotation: tolerated(ENST00000359568)
Consequence to Transcript downstream_gene_variant(ENST00000466474, ENST00000483844); missense_variant(ENST00000359568); non_coding_transcript_exon_variant(ENST00000480896); non_coding_transcript_variant(ENST00000480896)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Anitha, A., 2008 A/G Genotypic P-value = 0.506, allelic P-value = 0.446 for BD wh...... Genotypic P-value = 0.506, allelic P-value = 0.446 for BD when compared with controls. More... none of the SNPs analyzed in our study showed a significant ...... none of the SNPs analyzed in our study showed a significant association with bipolar disorder More... Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
PCNT pericentrin 21q22.3 1(0/1/0)

SNPs in LD with rs2839223 (count: 0) View in gBrowse (chr21:46357148..46357148 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)