SNP Report

Basic Info

Name	rs2734583 dbSNP Ensembl
Location	chrCHR_HSCHR6_MHC_SSTO_CTG1:31528452 - 31528452(1)
Variant Alleles	A/G
Ancestral Allele	A
Minor Allele	G
Minor Allele Frequence	0.066893
Functional Annotation	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000418897, ENST00000419020, ENST00000456976, ENST00000475917, ENST00000480131, ENST00000584275); intron_variant(ENST00000376177, ENST00000376185, ENST00000396172, ENST00000419338, ENST00000427214, ENST00000428098, ENST00000428450, ENST00000431908, ENST00000449757, ENST00000456662, ENST00000458640, ENST00000462256, ENST00000481456, ENST00000482195); NMD_transcript_variant(ENST00000376185); non_coding_transcript_variant(ENST00000462256, ENST00000481456, ENST00000482195); upstream_gene_variant(ENST00000364915, ENST00000416684, ENST00000417023, ENST00000420520, ENST00000484566, ENST00000433987, ENST00000434740, ENST00000451465, ENST00000416325, ENST00000420337, ENST00000426766, ENST00000427652, ENST00000427927, ENST00000433789, ENST00000437943, ENST00000448800, ENST00000455806, ENST00000457121, ENST00000471062, ENST00000487410, ENST00000471062, ENST00000487410, ENST00000412386, ENST00000432549, ENST00000467581, ENST00000493350, ENST00000580417, ENST00000414451, ENST00000415036, ENST00000426189, ENST00000429022, ENST00000580739, ENST00000412106, ENST00000415689, ENST00000420958, ENST00000427425, ENST00000438449, ENST00000438578, ENST00000439691, ENST00000442717, ENST00000451051, ENST00000455645, ENST00000456476, ENST00000467694, ENST00000482077, ENST00000485571, ENST00000482077, ENST00000485571, ENST00000422243, ENST00000426686, ENST00000431826, ENST00000464411, ENST00000583420, ENST00000413544, ENST00000415515, ENST00000417491, ENST00000443933, ENST00000579171, ENST00000415390, ENST00000417558, ENST00000432189, ENST00000433291, ENST00000436919, ENST00000441425, ENST00000445783, ENST00000449100, ENST00000453138, ENST00000453488, ENST00000456666, ENST00000461254, ENST00000465849, ENST00000483957, ENST00000461254, ENST00000465849, ENST00000483957, ENST00000417995, ENST00000429221, ENST00000453815, ENST00000497007, ENST00000581427, ENST00000412246, ENST00000439857, ENST00000441901, ENST00000448658, ENST00000582411, ENST00000411415, ENST00000412330, ENST00000416969, ENST00000432433, ENST00000438301, ENST00000444480, ENST00000445218, ENST00000446341, ENST00000448000, ENST00000448296, ENST00000455916, ENST00000467175, ENST00000473685, ENST00000489325, ENST00000467175, ENST00000473685, ENST00000489325, ENST00000428170, ENST00000433293, ENST00000446935, ENST00000484344, ENST00000579412, ENST00000414881, ENST00000418760, ENST00000452163, ENST00000457900, ENST00000582289, ENST00000413678, ENST00000414088, ENST00000414440, ENST00000416183, ENST00000416863, ENST00000430703, ENST00000438433, ENST00000441479, ENST00000446909, ENST00000452792, ENST00000452908, ENST00000468089, ENST00000494457, ENST00000494835, ENST00000468089, ENST00000494457, ENST00000494835, ENST00000428107, ENST00000445939, ENST00000449747, ENST00000482080, ENST00000578360, ENST00000423951, ENST00000425047, ENST00000438883, ENST00000452414, ENST00000583430, ENST00000383508, ENST00000400293, ENST00000400295, ENST00000400296, ENST00000415027, ENST00000432466, ENST00000435182, ENST00000442537, ENST00000446272, ENST00000446328, ENST00000449863, ENST00000462954, ENST00000485534, ENST00000495391, ENST00000462954, ENST00000485534, ENST00000495391, ENST00000413390, ENST00000414715, ENST00000445602, ENST00000495997, ENST00000584949, ENST00000419913, ENST00000449010, ENST00000453799, ENST00000455324, ENST00000581604, ENST00000417136, ENST00000427489, ENST00000428291, ENST00000430784, ENST00000431360, ENST00000436995, ENST00000439927, ENST00000444267, ENST00000444726, ENST00000450987, ENST00000453381, ENST00000489688, ENST00000490297, ENST00000496801, ENST00000453381, ENST00000489688, ENST00000490297, ENST00000496801, ENST00000425681, ENST00000454053, ENST00000455400, ENST00000493860, ENST00000582702)
No. of Studies	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 5)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
DDX39B	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	6p21.33	Mapped by LD-proxy
DDX39B-AS1	DDX39B antisense RNA 1	6p21.33	Mapped by LD-proxy
SNORD84	small nucleolar RNA, C/D box 84	6p21.33	Mapped by LD-proxy
SNORD117	small nucleolar RNA, C/D box 117	6p21.33	Mapped by LD-proxy
ATP6V1G2-DDX39B	ATP6V1G2-DDX39B readthrough (NMD candidate)	6p21.33	Mapped by LD-proxy

SNPs in LD with rs2734583 (count: 0) View in gBrowse (chrCHR_HSCHR6_MHC_SSTO_CTG1:31528452..31528452 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)