SNP Report

Basic Info

Name	rs2279020 dbSNP Ensembl
Location	chr5:161895883 - 161895883(1)
Variant Alleles	G/A
Ancestral Allele	A
Minor Allele	G
Minor Allele Frequence	0.403954
Functional Annotation	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000519542, ENST00000634335); intron_variant(ENST00000023897, ENST00000393943, ENST00000428797, ENST00000437025, ENST00000635880, ENST00000636340, ENST00000636408, ENST00000636573, ENST00000637044, ENST00000637827, ENST00000638112, ENST00000638159); NMD_transcript_variant(ENST00000636340, ENST00000637044); non_coding_transcript_variant(ENST00000636408)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	YES

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Horiuchi, Y.,2004			Association analysis: genotype P-value = 0.25, allele P-valu...... Association analysis: genotype P-value = 0.25, allele P-value = 0.29 More...	No significant association was observed in BD. No significant association was observed in BD.	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
GABRA1	gamma-aminobutyric acid (GABA) A receptor, alpha 1	5q34	2(1/1/0)

SNPs in LD with rs2279020 (count: 0) View in gBrowse (chr5:161895883..161895883 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
Horiuchi, Y.,2004	Association analysis:genotype P-value = 0.55, allele P-value = 0.58	No significant association was observed.	Negative