BDgene

SNP Report

Basic Info
Name rs2220984 dbSNP Ensembl
Location chr16:76903031 - 76903031(1)
Variant Alleles A/G
Ancestral Allele G
Minor Allele A
Minor Allele Frequence 0.449081
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000567777); non_coding_transcript_variant(ENST00000567777)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Kuo, P. H., 2014 P-value=0.00725, OR=0.7, 95%CI=0.5-0.9 for the second stage P-value=0.00725, OR=0.7, 95%CI=0.5-0.9 for the second stage The marker is identified to be associated with bipolar disor...... The marker is identified to be associated with bipolar disorder in the fine-mapping stage with P-value less than 0.05. More... Positive

SNP related genes (count: 0)

SNPs in LD with rs2220984 (count: 29) View in gBrowse (chr16:76892281..76955052 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 29)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016