SNP Report

Basic Info

Name	rs2220984 dbSNP Ensembl
Location	chr16:76903031 - 76903031(1)
Variant Alleles	A/G
Ancestral Allele	G
Minor Allele	A
Minor Allele Frequence	0.449081
Functional Annotation	intron_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000567777); non_coding_transcript_variant(ENST00000567777)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Kuo, P. H., 2014			P-value=0.00725,Â OR=0.7, 95%CI=0.5-0.9 for the second stage P-value=0.00725,Â OR=0.7, 95%CI=0.5-0.9 for the second stage	The marker is identified to be associated with bipolar disor...... The marker is identified to be associated with bipolar disorder in the fine-mapping stage with P-value less than 0.05. More...	Positive

SNP related genes (count: 0)

SNPs in LD with rs2220984 (count: 29) View in gBrowse (chr16:76892281..76955052 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 29)

rs_ID	Functional Annotation	r²[population]
rs1874536	intron_variant; non_coding_transcript_variant	0.951[CHB]; 1.0[JPT]
rs1580765	intron_variant; non_coding_transcript_variant	1.0[CHB]; 1.0[JPT]
rs11149936	intron_variant; non_coding_transcript_variant	1.0[CHB]; 1.0[JPT]
rs8047542		1.0[CHB]; 0.951[JPT]
rs1874532	intron_variant; non_coding_transcript_variant	1.0[CHB]; 1.0[JPT]
rs2088334	intron_variant; non_coding_transcript_variant	1.0[CHB]; 0.952[JPT]
rs1502438		1.0[CHB]; 0.903[JPT]
rs8060497		1.0[CHB]; 0.952[JPT]
rs4519342	intron_variant; non_coding_transcript_variant	1.0[CHB]; 1.0[JPT]
rs8055572	intron_variant; non_coding_transcript_variant	0.95[CHB]; 1.0[JPT]
rs1502437		0.947[CHB]; 0.887[JPT]
rs10163405	intron_variant; non_coding_transcript_variant	1.0[CHB]; 1.0[JPT]
rs1390907	intron_variant; non_coding_transcript_variant	0.95[CHB]; 1.0[JPT]
rs7188131	downstream_gene_variant	0.952[CHB]; 1.0[JPT]
rs7199051	intron_variant; non_coding_transcript_variant	1.0[CHB]; 1.0[JPT]
rs1393432		1.0[CHB]; 0.901[JPT]
rs1496959	downstream_gene_variant	1.0[CHB]; 1.0[JPT]
rs4888570	intron_variant; non_coding_transcript_variant	1.0[CHB]; 1.0[JPT]
rs6564379		1.0[CHB]; 0.952[JPT]
rs1496961	intron_variant; non_coding_transcript_variant	1.0[CHB]; 1.0[JPT]
rs2029962	intron_variant; non_coding_transcript_variant	1.0[CHB]; 1.0[JPT]
rs7194919		1.0[CHB]; 0.951[JPT]
rs1039120	intron_variant; non_coding_transcript_variant	1.0[CHB]; 1.0[JPT]
rs12598288		1.0[CHB]; 0.951[JPT]
rs7201555	intron_variant; non_coding_transcript_variant	0.952[CHB]; 0.95[JPT]
rs11644246	intron_variant; non_coding_transcript_variant	1.0[CHB]; 1.0[JPT]
rs1532442	intron_variant; non_coding_transcript_variant	0.854[CHB]
rs13337970	intron_variant; non_coding_transcript_variant	1.0[CHB]; 0.948[JPT]
rs11866373	intron_variant; non_coding_transcript_variant	1.0[CHB]; 1.0[JPT]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)