BDgene

SNP Report

Basic Info
Name rs2186350 dbSNP Ensembl
Location chr21:46397039 - 46397039(1)
Variant Alleles G/A
Ancestral Allele A
Minor Allele G
Minor Allele Frequence 0.330671
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000359568, ENST00000480896); non_coding_transcript_variant(ENST00000480896)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Anitha, A., 2008 A/G Genotypic P-value = 0.119, allelic P-value = 0.08 for BD whe...... Genotypic P-value = 0.119, allelic P-value = 0.08 for BD when compared with controls. More... a weak tendency toward association was observed a weak tendency toward association was observed Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
PCNT pericentrin 21q22.3 1(0/1/0)

SNPs in LD with rs2186350 (count: 29) View in gBrowse (chr21:46342460..46543738 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 29)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)