BDgene

SNP Report

Basic Info
Name rs2179871 dbSNP Ensembl
Location chr22:36695586 - 36695586(1)
Variant Alleles T/C
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.161941
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000300105)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Koefoed, P.,2011 Chi-square test: P-value = 0.023 Chi-square test: P-value = 0.023 Significant association was found in genotype association. Significant association was found in genotype association. Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
CACNG2 calcium channel, voltage-dependent, gamma subunit 2 22q13.1 3(3/0/0)

SNPs in LD with rs2179871 (count: 0) View in gBrowse (chr22:36695586..36695586 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016