BDgene

SNP Report

Basic Info
Name rs2157220 dbSNP Ensembl
Location chr22:34704467 - 34704467(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele C
Minor Allele Frequence 0.427716
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000423712); non_coding_transcript_variant(ENST00000423712)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Potash, J. B., 2008 T/C Family-based P-value = 0.36 for all BPAD subjects, family-ba...... Family-based P-value = 0.36 for all BPAD subjects, family-based P-value = 0.61 for BPAD subjects with psychotic symptoms, family-based P-value = 0.075 (3-marker sliding window with indicated marker first of the three), family-based P-value = 0.11 (3-marker sliding window with indicated marker first of the three using only those BPAD subjects with psychotic symptoms).Case-control P-value = 0.69 for all BPAD subjects, case-control P-value = 0.33 for BPAD subjects with psychotic symptoms, case-control P-value = 0.29 (3-marker sliding window with indicated marker first of the three), case-control P-value = 0.13 (3-marker sliding window with indicated marker first of the three using only those BPAD subjects with psychotic symptoms). More... Negative

SNP related genes (count: 0)

SNPs in LD with rs2157220 (count: 55) View in gBrowse (chr22:34659216..34742130 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 55)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016