BDgene

SNP Report

Basic Info
Name rs2097368 dbSNP Ensembl
Location chr22:34729730 - 34729730(1)
Variant Alleles A/G
Ancestral Allele A
Minor Allele G
Minor Allele Frequence 0.0301518
Functional Annotation upstream_gene_variant.
Consequence to Transcript upstream_gene_variant(ENST00000440858)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Potash, J. B., 2008 A/G Family-based P-value = 0.54 for all BPAD subjects, family-ba...... Family-based P-value = 0.54 for all BPAD subjects, family-based P-value = 0.71 for BPAD subjects with psychotic symptoms, family-based P-value = 0.013 (3-marker sliding window with indicated marker first of the three), family-based P-value = 0.016 (3-marker sliding window with indicated marker first of the three using only those BPAD subjects with psychotic symptoms).Case-control P-value = 0.69 for all BPAD subjects, case-control P-value = 0.66 for BPAD subjects with psychotic symptoms, case-control P-value = 0.58 (3-marker sliding window with indicated marker first of the three), case-control P-value = 0.48 (3-marker sliding window with indicated marker first of the three using only those BPAD subjects with psychotic symptoms). More... Positive

SNP related genes (count: 0)

SNPs in LD with rs2097368 (count: 24) View in gBrowse (chr22:34589925..34743749 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 24)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016