BDgene

SNP Report

Basic Info
Name rs1940594 dbSNP Ensembl
Location chr18:5882644 - 5882644(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.178914
Functional Annotation 3_prime_UTR_variant; upstream_gene_variant.
Consequence to Transcript 3_prime_UTR_variant(ENST00000581347); upstream_gene_variant(ENST00000577694, ENST00000580845, ENST00000582939)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Mulle, J. G., 2007 allelic TDT X2=7.619, P-value = 0.0058 allelic TDT X2=7.619, P-value = 0.0058 No SNP in this analysis had an adjusted P-value < 0.05. Tran...... No SNP in this analysis had an adjusted P-value < 0.05. Transmission disequilibrium test analysis revealed no statistically significant association to SNPs or haplotypes within this region in this sample. More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
TMEM200C transmembrane protein 200C 18p11.31 Mapped by Literature SNP

SNPs in LD with rs1940594 (count: 8) View in gBrowse (chr18:5857092..5886730 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 8)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016