SNP Report

Basic Info

Name	rs1872824 dbSNP Ensembl
Location	chr12:72036534 - 72036534(1)
Variant Alleles	A/G
Ancestral Allele	A
Minor Allele	G
Minor Allele Frequence	0.49401
Functional Annotation	downstream_gene_variant; intron_variant; non_coding_transcript_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000333850); intron_variant(ENST00000547278, ENST00000547348, ENST00000550403, ENST00000551074); non_coding_transcript_variant(ENST00000547278, ENST00000547348, ENST00000550403, ENST00000551074)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Chen, S., 2014	A/G		Allele frequency: P-value=0.053764, Permutated P-value=0.189...... Allele frequency: P-value=0.053764, Permutated P-value=0.1891; Genotype frequency: P-value=0.01656, H-W P-value=0.201857(case), H-W P-value=0.086564(control). More...	Rs1872824 showed statistically marginal differences between ...... Rs1872824 showed statistically marginal differences between cases and controls in genotype frequencies (P-value=0.016563), but no significant differences in allele distribution. More...	Positive

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
TPH2	tryptophan hydroxylase 2	12q15	13(10/3/0)

SNPs in LD with rs1872824 (count: 0) View in gBrowse (chr12:72036534..72036534 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)