SNP Report

Basic Info

Name	rs17110747 dbSNP Ensembl
Location	chr12:72032174 - 72032174(1)
Variant Alleles	G/A
Ancestral Allele	G
Minor Allele	A
Minor Allele Frequence	0.145367
Functional Annotation	3_prime_UTR_variant; intron_variant; non_coding_transcript_variant.
Consequence to Transcript	3_prime_UTR_variant(ENST00000333850); intron_variant(ENST00000547278, ENST00000547348, ENST00000550403, ENST00000551074); non_coding_transcript_variant(ENST00000547278, ENST00000547348, ENST00000550403, ENST00000551074)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Lin, Y. M., 2007	G/A		chi-square P-value = 0.07 chi-square P-value = 0.07	this SNP was not associated with the disease this SNP was not associated with the disease	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
TPH2	tryptophan hydroxylase 2	12q15	13(10/3/0)

SNPs in LD with rs17110747 (count: 5) View in gBrowse (chr12:72032174..72109907 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs1487283	intron_variant; non_coding_transcript_variant	0.875[JPT]
rs11614604	intron_variant; non_coding_transcript_variant	0.812[JPT]
rs11179071	intron_variant; non_coding_transcript_variant; upstream_gene_variant	0.816[JPT]
rs3858589	intron_variant; non_coding_transcript_variant	0.816[JPT]
rs4760822	intron_variant; non_coding_transcript_variant; upstream_gene_variant	0.813[JPT]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)