BDgene

SNP Report

Basic Info
Name rs17110566 dbSNP Ensembl
Location chr12:71972867 - 71972867(1)
Variant Alleles G/A
Ancestral Allele G
Minor Allele A
Minor Allele Frequence 0.0567093
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000333850)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Xiang, B., 2013 A/G P-value=2.04E-04, OR=0.58, X2=13.79, Bonf P-value...... P-value=2.04E-04, OR=0.58, X2=13.79, Bonf P-value=0.009 More... Analysis for effects of individual SNPs revealed that 2/21 S...... Analysis for effects of individual SNPs revealed that 2/21 SNPs (rs1475196 and rs9567747) in the HTR2A gene and 1/23 SNPs (rs17110566) in the TPH2 gene showed a statistically significant association with BP-I both genotype-wise and allele-wise. More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
TPH2 tryptophan hydroxylase 2 12q15 13(10/3/0)

SNPs in LD with rs17110566 (count: 0) View in gBrowse (chr12:71972867..71972867 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016