BDgene

SNP Report

Basic Info
Name rs1416325 dbSNP Ensembl
Location chr9:76140576 - 76140576(1)
Variant Alleles G/T
Ancestral Allele G
Minor Allele T
Minor Allele Frequence 0.282947
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000376752, ENST00000376767, ENST00000424854, ENST00000545128)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Hattori, E.,2009 In GWAS: Allelic P-value = 0.00824, Genotypic P-value = 0.03...... In GWAS: Allelic P-value = 0.00824, Genotypic P-value = 0.03772, Recessive P-value = 0.02484, HWE P-value = 0.22884; in Follow-up study: MAF=0.28, Allelic P-value = 0.03521, Allelic Q-value=0.54802, HWE P-value = 0.99691 More... Significant association was observed in both GWAS and Follow...... Significant association was observed in both GWAS and Follow-up study. More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
PCSK5 proprotein convertase subtilisin/kexin type 5 9q21.13 1(1/0/0)

SNPs in LD with rs1416325 (count: 3) View in gBrowse (chr9:76136716..76142251 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 3)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)