SNP Report

Basic Info

Name	rs1412005 dbSNP Ensembl
Location	chr9:90646879 - 90646879(1)
Variant Alleles	T/G
Ancestral Allele	G
Minor Allele	T
Minor Allele Frequence	0.366414
Functional Annotation	upstream_gene_variant.
Consequence to Transcript	upstream_gene_variant(ENST00000375765, ENST00000636786, ENST00000637905)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Reif, A.,2011	G/T	T	X² test: P-value = 0.0256, OR=1.32, 95%CI=1.03-1....... X² test: P-value = 0.0256, OR=1.32, 95%CI=1.03-1.67 More...	Significant association was found . Significant association was found .	Positive

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
DIRAS2	DIRAS family, GTP-binding RAS-like 2	9q22.32	1(1/0/0)

SNPs in LD with rs1412005 (count: 11) View in gBrowse (chr9:90641705..90674575 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs1831521	upstream_gene_variant	1.0[CEU]; 1.0[TSI]
rs1360471		1.0[CEU]; 1.0[TSI]
rs12684237		1.0[CEU]; 1.0[TSI]
rs1819453		0.809[CEU]; 0.934[TSI]
rs6479614		1.0[CEU]
rs7029114		0.809[CEU]
rs1331494		0.809[CEU]
rs7860740		1.0[CEU]; 1.0[TSI]
rs1331506		0.825[CEU]; 0.936[TSI]
rs6479615		0.809[CEU]; 0.934[TSI]
rs1466381	intron_variant	0.809[CEU]; 0.869[TSI]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)