BDgene

SNP Report

Basic Info
Name rs13245945 dbSNP Ensembl
Location chr7:7719570 - 7719570(1)
Variant Alleles T/C
Ancestral Allele T
Minor Allele C
Minor Allele Frequence 0.048123
Functional Annotation intron_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript intron_variant(ENST00000463725, ENST00000469183, ENST00000482067, ENST00000493246, ENST00000636849); non_coding_transcript_variant(ENST00000469183, ENST00000493246); upstream_gene_variant(ENST00000223129)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Chen, X., 2015 A/G P-value=4E-20, OR=0.38, 95%CI=0.31-0.47 P-value=4E-20, OR=0.38, 95%CI=0.31-0.47 Chromosome 7 associated SNPs and flanking genes for bipolar ...... Chromosome 7 associated SNPs and flanking genes for bipolar disorder (BPD) from Affymetrix Genome-wide Human SNP Array 6.0 in the population of Shandong province of China. More... Positive

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
RPA3-AS1 UBAP1-MVB12-associated (UMA) domain containing 1 7p21.3 Mapped by Literature SNP
RPA3 replication protein A3, 14kDa 7p21.3 1(1/0/0)

SNPs in LD with rs13245945 (count: 36) View in gBrowse (chr7:7642808..7719656 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 36)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
To view this website normally, please make sure to allow Flash to run from the local filesystem in the security settings panel.
Last update: March 31, 2016