Search SNP
Search Gene
Search CNV
Search Haplotype
Search Other Variant
Search Region
Search Pathway
Search Study
SNP Report
Basic Info
| Name | rs12998068 dbSNP Ensembl | ||
|---|---|---|---|
| Location | chr2:154382620 - 154382620(1) | ||
| Variant Alleles | A/G | ||
| Ancestral Allele | A | ||
| Minor Allele | G | ||
| Minor Allele Frequence | 0.117212 | ||
| Functional Annotation | intron_variant; NMD_transcript_variant; non_coding_transcript_variant. | ||
| Consequence to Transcript | intron_variant(ENST00000392825, ENST00000409237, ENST00000431076, ENST00000450838, ENST00000487047); NMD_transcript_variant(ENST00000431076); non_coding_transcript_variant(ENST00000487047) | ||
| No. of Studies | 1 (Positive: 0; Negative: 1; Trend: 0) | ||
| Source | Literature | ||
| Overlap with SZ? | YES | ||
| Overlap with MDD? | NO | ||
SNP related studies (count: 1)
SNP related genes (count: 1)
| Approved Symbol | Approved Name | Location | No. of Studies (Positive/Negative/Trend)  |
|---|---|---|---|
| GALNT13 | polypeptide N-acetylgalactosaminyltransferase 13 | 2q24.1 | 1(0/1/0) |
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 8)
Overlap with SZ from cross-disorder studies (count: 1)
| Reference | Statistical Result | Description | Result Category |
|---|---|---|---|
| Bergen, S. E.,2012 | logistic regression:for SZ new sample, OR=1.4, P-value = 1.50E-06, for SZ full sample, OR=1.32, P-value = 8.60E-06 | No significant association was observed in SZ. | Negative |
Overlap with MDD from cross-disorder studies (count: 0)