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SNP Report
Name | rs12998068 dbSNP Ensembl | ||
---|---|---|---|
Location | chr2:154382620 - 154382620(1) | ||
Variant Alleles | A/G | ||
Ancestral Allele | A | ||
Minor Allele | G | ||
Minor Allele Frequence | 0.117212 | ||
Functional Annotation | intron_variant; NMD_transcript_variant; non_coding_transcript_variant. | ||
Consequence to Transcript | intron_variant(ENST00000392825, ENST00000409237, ENST00000431076, ENST00000450838, ENST00000487047); NMD_transcript_variant(ENST00000431076); non_coding_transcript_variant(ENST00000487047) | ||
No. of Studies | 1 (Positive: 0; Negative: 1; Trend: 0) | ||
Source | Literature | ||
Overlap with SZ? | YES | ||
Overlap with MDD? | NO |
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.
Reference | Statistical Result | Description | Result Category |
---|---|---|---|
Bergen, S. E.,2012 | logistic regression:for SZ new sample, OR=1.4, P-value = 1.50E-06, for SZ full sample, OR=1.32, P-value = 8.60E-06 | No significant association was observed in SZ. | Negative |