BDgene

SNP Report

Basic Info
Name rs12535264 dbSNP Ensembl
Location chr7:105605307 - 105605307(1)
Variant Alleles A/G
Ancestral Allele A
Minor Allele G
Minor Allele Frequence 0.138179
Functional Annotation 3_prime_UTR_variant; downstream_gene_variant; upstream_gene_variant.
Consequence to Transcript 3_prime_UTR_variant(ENST00000419735); downstream_gene_variant(ENST00000477775); upstream_gene_variant(ENST00000490493)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Chen, X., 2015 C/T P-value=1.6E-20, OR=0.37, 95%CI=0.30-0.46 P-value=1.6E-20, OR=0.37, 95%CI=0.30-0.46 Chromosome 7 associated SNPs and flanking genes for bipolar ...... Chromosome 7 associated SNPs and flanking genes for bipolar disorder (BPD) from Affymetrix Genome-wide Human SNP Array 6.0 in the population of Shandong province of China. More... Positive

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
EFCAB10 EF-hand calcium binding domain 10 7q22.2 Mapped by Literature SNP
ATXN7L1 ataxin 7-like 1 7q22.1 1(1/0/0)

SNPs in LD with rs12535264 (count: 3) View in gBrowse (chr7:105605307..105612365 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 3)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)