BDgene

SNP Report

Basic Info
Name rs11951528 dbSNP Ensembl
Location chr5:161790470 - 161790470(1)
Variant Alleles G/A
Ancestral Allele A
Minor Allele A
Minor Allele Frequence 0.394768
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Yosifova, A.,2011 GWAS P-value = 0.0000199, OR(95%CI)=2.14(1.48-3.10); Replica...... GWAS P-value = 0.0000199, OR(95%CI)=2.14(1.48-3.10); Replication P-value = 0.527, OR(95%CI)=1.24(0.65-2.39); Mantel-Haenszel P-value = 0.00283, OR(95%CI)=1.5(1.13-1.98) More... No significant association was observed in BD. No significant association was observed in BD. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
GABRA1 gamma-aminobutyric acid (GABA) A receptor, alpha 1 5q34 2(1/1/0)

SNPs in LD with rs11951528 (count: 9) View in gBrowse (chr5:161755610..161812447 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 9)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
To view this website normally, please make sure to allow Flash to run from the local filesystem in the security settings panel.
Last update: March 31, 2016