SNP Report

Basic Info

Name	rs1125777 dbSNP Ensembl
Location	chr1:61366218 - 61366218(1)
Variant Alleles	C/T
Ancestral Allele	C
Minor Allele	T
Minor Allele Frequence	0.497404
Functional Annotation	intron_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000371184, ENST00000371185, ENST00000371187, ENST00000371189, ENST00000371191, ENST00000403491, ENST00000407417, ENST00000479364, ENST00000482020, ENST00000485903); non_coding_transcript_variant(ENST00000479364)
No. of Studies	1 (Positive: 0; Negative: 0; Trend: 1)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Lee, H. J., 2013			P-value=1.77E-06, Permutated P-value=3.00E-06, OR=2.142, Con...... P-value=1.77E-06, Permutated P-value=3.00E-06, OR=2.142, Confidence Interval (CI)=0.24-0.56 More...	No genome-wide significant association was found in this stu...... No genome-wide significant association was found in this study. More...	Trend

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
NFIA	nuclear factor I/A	1p31.3-p31.2	1(0/1/0)
NFIX	nuclear factor I/X (CCAAT-binding transcription factor)	19p13.3	4(0/3/1)

SNPs in LD with rs1125777 (count: 0) View in gBrowse (chr1:61366218..61366218 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)