BDgene

SNP Report

Basic Info
Name rs10491113 dbSNP Ensembl
Location chr17:34677114 - 34677114(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.180112
No. of Studies 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Sklar, P., 2008 A/G CMH (Cochran-Mantel-Haenszel) P-value = 2.69E-05, allelic P-...... CMH (Cochran-Mantel-Haenszel) P-value = 2.69E-05, allelic P-value = 9.90E-06, OR=0.74, pSNP test P-value = 1.03E-05, pHAP test P-value = 7.36E-02, r2=0.21 More... Trend

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
TMEM132E transmembrane protein 132E 17q12 1(0/0/1)

SNPs in LD with rs10491113 (count: 2) View in gBrowse (chr17:34671558..34682404 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 2)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016