BDgene

SNP Report

Basic Info
Name rs1008707 dbSNP Ensembl
Location chr7:107785239 - 107785239(1)
Variant Alleles A/T
Ancestral Allele T
Minor Allele A
Minor Allele Frequence 0.233626
Functional Annotation intron_variant; NMD_transcript_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000340010, ENST00000379083, ENST00000468551, LRG_683t1); NMD_transcript_variant(ENST00000379083); non_coding_transcript_variant(ENST00000468551)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Chen, X., 2015 A/T P-value=1.46E-24, OR=0.34, 95%CI=0.28-0.42 P-value=1.46E-24, OR=0.34, 95%CI=0.28-0.42 Chromosome 7 associated SNPs and flanking genes for bipolar ...... Chromosome 7 associated SNPs and flanking genes for bipolar disorder (BPD) from Affymetrix Genome-wide Human SNP Array 6.0 in the population of Shandong province of China. More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
SLC26A3 solute carrier family 26 (anion exchanger), member 3 7q31 Mapped by Literature SNP

SNPs in LD with rs1008707 (count: 1) View in gBrowse (chr7:107783875..107785239 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 1)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)