SNP Report

Basic Info

Name	rs1002777 dbSNP Ensembl
Location	chr11:125574708 - 125574708(1)
Variant Alleles	C/T
Ancestral Allele	T
Minor Allele	T
Minor Allele Frequence	0.340655
Functional Annotation	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000529812); intron_variant(ENST00000278903, ENST00000524723, ENST00000527131, ENST00000527235, ENST00000527520, ENST00000527842, ENST00000529765, ENST00000530526, ENST00000531636, ENST00000534546, ENST00000615917, ENST00000618552, ENST00000620753); NMD_transcript_variant(ENST00000531636); non_coding_transcript_variant(ENST00000529765, ENST00000530526); upstream_gene_variant(ENST00000410365)
No. of Studies	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 3)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
RNU6-1156P	RNA, U6 small nuclear 1156, pseudogene	11q24.2	Mapped by LD-proxy
EI24	etoposide induced 2.4	11q24.2	Mapped by LD-proxy
STT3A-AS1	STT3A antisense RNA 1	11q24.2	Mapped by LD-proxy

SNPs in LD with rs1002777 (count: 0) View in gBrowse (chr11:125574708..125574708 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)