BDgene

Gene Report

Basic information Related studies Functional annotation Related other genetic factors Overlap with SZ and MDD ADD to My Gene Set Comment on Gene View All Comments on Gene
Basic Info
Approved Symbol NT5DC1
Previous Symbol NT5C2L1
Symbol Alias dJ486I3.1, MGC24302
Approved Name 5'-nucleotidase domain containing 1
Previous Name 5'-nucleotidase, cytosolic II-like 1
Location 6q22.31
Position chr6:116100849-116249497, 1
External Links HGNC: 21556
Entrez Gene: 221294
Ensembl: ENSG00000178425
UCSC: uc003pwj.3
No. of Studies 1 (Positive: 1; Negative: 0; trend: 0)
Overlap with SZ? NO
Overlap with MDD? NO
Gene related studies (count: 1)
Reference Tested Markers Statistical Values/Author Comments Result Category Comment on Study
Fan, J., 2010 SNP: rs1204787, rs4946138 For gene-based test, P-value = 0.29 in STEP1; P-value = 0.02 in NIMH; P-value = 0.05 in STEP1 and NIMH. nominally significant in NIMH sample and pooled sample, but not survive Bonferroni correction test. Positive Comment on Study
Gene functional annotation
Gene related GO terms (count: 3)

GO terms by PBA (count: 0)

GO terms by database search (count: 3)


Gene related KEGG pathways (count: 0)

Gene related BioCarta pathways (count: 0)

Gene related interactors from protein-protein interactions data in HPRD (count: 0)

Related other genetic factors
Gene related SNPs (count: 35)

Literature-origin SNPs (count: 2)

LD-proxies (count: 33)


Gene related CNVs (count: 0)

Gene related other variants (count: 0)

Gene related regions (count: 5)

Overlap with schizophrenia (SZ) and major depressive disorder (MDD)
Gene relationship with SZ

Gene relationship with MDD

View in gBrowse

Region: chr6:116100849..116249497 View in gBrowse
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Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016