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Study Report
| Comment on Study | View All Comments on Study |
| Reference | Hashimoto, R.,2005(a) PMID: 15866548 |
|---|---|
| Citation | Hashimoto, R., T. Okada, et al. (2005). The breakpoint cluster region gene on chromosome 22q11 is associated with bipolar disorder. Biol Psychiatry 57(10): 1097-1102. |
| Disease Type | Bipolar Disorder & Major Depressive Disorder |
| Study Design | case-control |
| Study Type | Candidate-gene association study |
| Sample Size | 171 bipolar disorder patients(102 bipolar I and 69 bipolar II), 329 major depressive disorder patients and 351 healthy controls |
| SNP/Region/Marker Size | 11 SNPs |
| Predominant Ethnicity | Mongloid |
| Population | Japanese |
| Gender | 65 males and 106 females in BP cases,116 males and 213 females in MDD cases and 170 males and 181 females in controls |
| Age Group | Adults : mean age: 50.8 years [SD 14.9],39.2 years [SD 15.2](onset) in BP cases, 54.3 years [SD 16.0],46.7 years [SD 15.3](onset) in MDD cases and 40.2 years [SD 12.0] in controls |
| Sample Diagnosis | DSM |
|---|---|
| Sample Status | Subjects were 171 patients with bipolar disorder (102 bipolar I [43 males and 59 females] and 69 bipolar II patients [22 males and 47 females]),329 patients with major depressive disorder and 351 healthy controls.In addition, subjects who were examined in our previous study on the XBP1 gene (Kakiuchi et al 2003), were included in this study; 83 patients with bipolar disorder (27 males and 56 females with mean age of 48.1 years [SD 14.6] and mean age of onset of 35.9 years [SD 15.1], 57 bipolar I [23 males and 34 females] and 26 bipolar II patients [4 males and 22 females]) and 97 healthy controls (51 males and 46 females with mean age of 38.8 years[SD 13.4]). All the subjects were biologically unrelated Japanese.Consensus diagnosis was made for each patient by at least two trained psychiatrists according to the DSM-IV criteria, based on all available information, including clinical interview, medical records and other research assessments. Controls were healthy volunteers who had no current or past contact to psychiatric services. Subjects with significant medical problems, history of head trauma, neurosurgery and alcohol or substance abuse were excluded. After description of the study, written informed consent was obtained from every subject. The study protocol was approved by institutional ethical committees (Showa University School of Medicine, RIKEN Brain Science Institute and National Center of Neurology and Psychiatry, Tokyo, Japan). |
| Technique | genotyping |
| Statistical Method | Statistical analysis of association studies was performed using SNPAlyse software (DYNACOM, Yokohama, Japan). The presence of Hardy-Weinberg equilibrium was examined using the X2 test for goodness of fit. Allele distributions between patients and controls were analyzed by the X2 test for independence. The measures of linkage disequilibrium (LD), denoted as D' and r2,were calculated from the haplotype frequency using Expectation-Maximization algorithm. |
| Result Summary | RESULTS: Significant allelic associations with bipolar disorder were observed for three SNPs, and associations with bipolar II disorder were observed in ten SNPs including N796S SNP (bipolar disorder, p = .0054; bipolar II disorder p = .0014). There was a significant association with major depression in six SNPs. S796 allele carriers were in excess in bipolar II patients (p = .0046, odds ratio = 3.1, 95% CI 1.53-8.76). Furthermore, we found a stronger evidence for association with bipolar II disorder in a multi-marker haplotype analysis (p = .0002). CONCLUSIONS: Our results suggest that genetic variations in the BCR gene could confer susceptibility to bipolar disorder and major depressive disorder. |
| SNP | Related Gene(s) | Allele Change | Risk Allele | Statistical Values | Author Comments | Result Category |
|---|---|---|---|---|---|---|
| rs2213172 | BCR | G/C | Allelic association: for BPII, P-value = 0.0009, OR=1.87; for MDD, P-value = 0.031, OR=1.28; for total cases, P-value = 0.04, OR=1.24; genotypic association: for BPII, P-value = 0.011; OR(95%CI)=2.03(1.19-3.61) | Significant associations were found in BD. Significant associations were found in BD. | Positive | |
| rs2267012 | BCR | A/G | Allelic association: for BPII, P-value = 0.0042, OR=1.7; for MDD, P-value = 0.0097, OR=1.33; for total cases, P-value = 0.0095, OR=1.29; genotypic association: for BPII, P-value = 0.031; OR(95%CI)=1.94(1.10-3.78) | Significant associations were found in BD. Significant associations were found in BD. | Positive | |
| rs2267013 | BCR | A/G | Allelic association: for BPII, P-value = 0.0018, OR=1.82; for MDD, P-value = 0.044, OR=1.27; for total cases, P-value = 0.047, OR=1.24; genotypic association: for BPII, P-value = 0.012; OR(95%CI)=1.95(1.19-3.49) | Significant associations were found in BD. Significant associations were found in BD. | Positive | |
| rs2267015 | BCR | T/A | Allelic association: for BPII, P-value = 0.0013, OR=1.84; for MDD, P-value = 0.023, OR=1.3; for total cases, P-value = 0.037, OR=1.25; genotypic association: for BPII, P-value = 0.01; OR(95%CI)=2.03(1.19-3.61) | Significant associations were found in BD. Significant associations were found in BD. | Positive | |
| rs131702 | BCR | T/G | Allelic association: for BP, P-value = 0.0026, OR=1.49; for BPI, P-value = 0.026, OR=1.43; for BPII, P-value = 0.013, OR=1.59; genotypic association: for BPII, P-value = 0.018; OR(95%CI)=2.07(1.20-4.02) | Significant associations were found in BD. Significant associations were found in BD. | Positive | |
| rs140504 | BCR | A/G | Allelic association: for BP, P-value = 0.0054, OR=1.45; for BPII, P-value = 0.0014, OR=1.84; for total cases, P-value = 0.018, OR=1.26; genotypic association: for BPII, P-value = 0.0046; OR(95%CI)=3.10(1.53-8.76) | Significant associations were found in BD. Significant associations were found in BD. | Positive | |
| rs1811017 | BCR RN7SL263P FBXW4P1 | A/G | Allelic association: for BP, P-value > 0.05 | No significant associations were found in BD. No significant associations were found in BD. | Negative | |
| rs2156921 | BCR | A/G | Allelic association: for BPII, P-value = 0.0017, OR=1.81; for MDD, P-value = 0.031, OR=1.29; for total cases, P-value = 0.05, OR=1.23; genotypic association: for BPII, P-value = 0.012; OR(95%CI)=2.01(1.13-3.65) | Significant associations were found in BD. Significant associations were found in BD. | Positive | |
| rs3761418 | BCR BCRP8 | A/G | Allelic association: for BPII, P-value = 0.0066, OR=1.66; for MDD, P-value = 0.012, OR=1.32; for total cases, P-value = 0.014, OR=1.29; genotypic association: for BPII, P-value = 0.017; OR(95%CI)=1.99(1.16-3.84) | Significant associations were found in BD. Significant associations were found in BD. | Positive | |
| rs2267020 | BCR | G/T | Allelic association: for BPII, P-value = 0.0144, OR=1.58; genotypic association: for BPII, P-value = 0.07; OR(95%CI)=1.75(1.01-3.62) | Significant associations were found in BD. Significant associations were found in BD. | Positive | |
| rs131690 | BCR | A/G | Allelic association: for BP, P-value = 0.0062, OR=1.5; for BPII, P-value = 0.0036, OR=1.79; genotypic association: for BPII, P-value = 0.022; OR(95%CI)=1.83(1.08-3.19) | Significant associations were found in BD. Significant associations were found in BD. | Positive |
| Markers | Haplotype | Related Gene(s)/Region(s) | Statistical Values | Author Comments | Result Category |
|---|---|---|---|---|---|
| rs1811017 - rs140504 - rs131690 - rs131702 | A-A-A-T | BCR | Haplotypic association: for BPII, global permutation P-value = 0.00041, 100, 000 simulations; permutation individual P-value = 0.0066 | Significant association was found in both global P-value and...... Significant association was found in both global P-value and individual P-value. More... | Positive |
| rs1811017 - rs140504 - rs131690 - rs131702 | A-G-G-G | BCR | Haplotypic association: for BPII, global permutation P-value = 0.00041, 100, 000 simulations; permutation individual P-value = 0.0002 | Significant association was found in both global P-value and...... Significant association was found in both global P-value and individual P-value. More... | Positive |
| Gene | Statistical Values/Author Comments | Result Category |
|---|---|---|
| BCR | Our results suggest that genetic variations in the BCR gene could confer susceptibility to bipolar d...... Our results suggest that genetic variations in the BCR gene could confer susceptibility to bipolar disorder and major depressive disorder. More... | Positive |
| Disease | SNP | Related Gene(s) | Statistical Values | Description | Result Category |
|---|---|---|---|---|---|
| MDD | rs1811017 | BCR RN7SL263P FBXW4P1 | Allelic association:for MDD, P-value > 0.05 | No significant associations were found in MDD. | Negative |
| MDD | rs140504 | BCR | Allelic association:for MDD, P-value > 0.05 | No significant associations were found in MDD. | Negative |
| MDD | rs131702 | BCR | Allelic association:for MDD, P-value > 0.05 | No significant associations were found in MDD. | Negative |
| MDD | rs131690 | BCR | Allelic association:for MDD, P-value > 0.05 | No significant associations were found in MDD. | Negative |
| MDD | rs2267013 | BCR | Allelic association:for MDD, P-value = 0.044, OR=1.27 | Significant associations were found in MDD. | Positive |
| MDD | rs2267012 | BCR | Allelic association:for MDD, P-value = 0.0097, OR=1.33 | Significant associations were found in MDD. | Positive |
| MDD | rs2213172 | BCR | Allelic association:for MDD, P-value = 0.031, OR=1.28 | Significant associations were found in MDD. | Positive |
| MDD | rs2156921 | BCR | Allelic association:for MDD, P-value = 0.031, OR=1.29 | Significant associations were found in MDD. | Positive |
| MDD | rs3761418 | BCR BCRP8 | Allelic association:for MDD, P-value = 0.012, OR=1.32 | Significant associations were found in MDD. | Positive |
| MDD | rs2267015 | BCR | Allelic association:for MDD, P-value = 0.023, OR=1.3 | Significant associations were found in MDD. | Positive |
| MDD | rs2267020 | BCR | Allelic association:for MDD, P-value > 0.05 | No significant associations were found in MDD. | Negative |
| Disease | Gene | Description | Result Category |
|---|---|---|---|
| MDD | BCR | Our results suggest that genetic variations in the BCR gene could confer susceptibility to bipolar disorder and major depressive disorder. | Positive |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
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Last update: March 31, 2016


