Study Report

Basic Info
| Reference |
Arai, M., 2004 PMID: 15050861
|
| Citation |
Arai, M., M. Itokawa, et al. (2004). "Association of neural cell adhesion molecule 1 gene polymorphisms with bipolar affective disorder in Japanese individuals." Biol Psychiatry 55(8): 804-810.
|
| Disease Type |
Bipolar Disorder & Major Depressive Disorder |
| Study Design |
case-control |
| Study Type |
Candidate-gene association study |
| Sample Size |
357 unrelated control individuals and 151 patients with bipolar disorder (66% bipolar I, 34% bipolar II) and 78 unipolar disorder |
| SNP/Region/Marker Size |
11 SNPs |
| Predominant Ethnicity |
Mongloid |
| Population |
Japanese |
| Gender |
Patients with bipolar disorder comprised 80 men and 71 women; patients with unipolar disorder comprised 33 men and 45 women; control subjects included 173 men and 184 women |
| Age Group |
adults
:
Patients with bipolar disorder comprised 80 men (mean age=49.0, SD=11.9 years) and 71 women (mean age=48.9, SD=12.4 years). Patients with unipolar disorder comprised 33 men (mean age=48.1, SD=10.7 years) and 45 women (mean age =50.7, SD=10.9 years). Control subjects included 173 men (mean age=50.5, SD=13.5 years) and 184 women (mean age=52.8, SD=11.0 years).
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Detail Info
| Sample Diagnosis |
DSM-IV |
| Technique |
PCR and genotyping |
| Statistical Method |
Departure from Hardy-Weinberg equilibrium was examined with the X2 test. Differences in genotype and allele frequencies were evaluated with Fisher's exact test or the Monte-Carlo method implemented in the CLUMP program when appropriate. Linkage disequilibrium (LD) statistics were calculated with COCAPHASE. Estimation and comparison of haplotype frequencies were made with COCAPHASE. Graphic overview of pairwise LD strength between markers was made with GOLD software. Power calculations were performed with Power Calculator. |
| Result Summary |
Three single nucleotide polymorphisms, IVS6+32T>C, IVS7+11G>C and IVS12+21C>A, displayed significant associations with bipolar disorder (for allelic associations, nominal p =.04, p =.02, and p =.004, respectively, all p >.05 after Bonferroni corrections). Furthermore, the haplotype located in a linkage disequilibrium block was strongly associated with bipolar disorder (the p value of the most significant three-marker haplotype is .005). Our results suggest that genetic variations in NCAM1 or nearby genes could confer risks associated with bipolar affective disorder in Japanese individuals. |

Genetic factors reported by this study for BD

SNPs reported by this study for BD (count: 2)
| SNP |
Related Gene(s) |
Allele Change |
Risk Allele |
Statistical Values |
Author Comments |
Result Category |
| rs686050 |
NCAM1
|
G>C |
|
Fisher's exact test genotypic P-value = 0.06 , allelic P-value = 0.04
|
This polymorphism displayed trend toward genotypic associati......
This polymorphism displayed trend toward genotypic association with bipolar disease.
More...
|
Positive
|
| rs646558 |
NCAM1
|
C>A |
|
Fisher's exact test genotypic P-value = 0.01 , allelic P-value = 0.004
|
This polymorphism displayed a nominally significantly differ......
This polymorphism displayed a nominally significantly different genotypic distribution between patients with bipolar disorder and control subjects.
More...
|
Positive
|

Other variants reported by this study for BD (count: 7)
| Variant Name |
Related Gene |
Type |
Allele Change |
Risk Allele |
Statistical Values |
Author Comments |
Result Category |
| NCAM1 IVS7+155G>T |
NCAM1 |
point mutation |
G>T |
|
Fisher's exact test genotypic P-value = 1.00 , allelic P-value = 0.90
|
|
Negative
|
| NCAM1 IVS0-49de IG |
NCAM1 |
point mutation |
|
|
Fisher's exact test genotypic P-value = 0.89 , allelic P-value = 0.55
|
|
Negative
|
| NCAM1 IVS4+80G>C |
NCAM1 |
point mutation |
G>C |
|
Fisher's exact test genotypic P-value = 0.17 , allelic P-value = 0.08
|
|
Negative
|
| NCAM1 2256 2257 insATGG |
NCAM1 |
point mutation |
|
|
Fisher's exact test genotypic P-value = 0.32 , allelic P-value = 0.33
|
|
Negative
|
| NCAM1 I621G>T |
NCAM1 |
point mutation |
G>T |
|
Fisher's exact test genotypic P-value = 0.64 , allelic P-value = 0.38
|
|
Negative
|
| NCAM1 IVS6+32T>C |
NCAM1 |
point mutation |
T>C |
|
Fisher's exact test genotypic P-value = 0.06 , allelic P-value = 0.04
|
This polymorphism displayed trend toward genotypic associati......
This polymorphism displayed trend toward genotypic association with bipolar disease.
More...
|
Positive
|
| NCAM1 2208T>G |
NCAM1 |
point mutation |
T>G |
|
Fisher's exact test genotypic P-value = 0.15 , allelic P-value = 0.23
|
|
Negative
|

Genes reported by this study for BD (count: 1)
| Gene |
Statistical Values/Author Comments |
Result Category |
| NCAM1 |
Three single nucleotide polymorphisms, IVS6+32T>C, IVS7+11G>C and IVS12+21C>A, displayed significant associations with bipolar disorder (for allelic associations, nominal p =.04, p =.02, and p =.004, respectively, all p >.05 after Bonferroni corrections). The haplotype located in a linkage disequilibrium block was strongly associated with bipolar disorder (the p value of the most significant three-marker haplotype is .005)..
Our results suggest that genetic variations in NCAM1 or nearby genes could confer risks associated w......
Our results suggest that genetic variations in NCAM1 or nearby genes could confer risks associated with bipolar affective disorder in Japanese individuals.
More...
|
Positive
|

Genetic factors reported by this study for SZ and/or MDD

SNPs reported by this study for SZ/MDD
| Disease |
SNP |
Related Gene(s) |
Statistical Values |
Description |
Result Category |
| MDD |
rs646558 |
NCAM1
|
Fisher's exact test genotypic P-value = 0.51 , allelic P-value = 0.64 |
For unipolar disorder, none of these polymorphisms displayed nominally significant genotypic or allelic associations with the disease. |
Negative
|
| MDD |
rs686050 |
NCAM1
|
Fisher's exact test genotypic P-value = 0.45 , allelic P-value = 0.48 |
For unipolar disorder, none of these polymorphisms displayed nominally significant genotypic or allelic associations with the disease. |
Negative
|

Other variants reported by this study for SZ/MDD
| Disease |
Variant Name |
Related Gene |
Type |
Statistical Values |
Description |
Result Category |
| MDD |
NCAM1 I621G>T |
NCAM1 |
point mutation |
Fisher's exact test genotypic P-value = 0.28 , allelic P-value = 0.29 |
For unipolar disorder, none of these polymorphisms displayed nominally significant genotypic or allelic associations with the disease. |
Negative
|
| MDD |
NCAM1 IVS0-49de IG |
NCAM1 |
point mutation |
Fisher's exact test genotypic P-value = 0.95 , allelic P-value = 0.89 |
For unipolar disorder, none of these polymorphisms displayed nominally significant genotypic or allelic associations with the disease. |
Negative
|
| MDD |
NCAM1 IVS4+80G>C |
NCAM1 |
point mutation |
Fisher's exact test genotypic P-value = 0.85, allelic P-value = 0.72 |
For unipolar disorder, none of these polymorphisms displayed nominally significant genotypic or allelic associations with the disease. |
Negative
|
| MDD |
NCAM1 IVS7+155G>T |
NCAM1 |
point mutation |
Fisher's exact test genotypic P-value = 0.89 , allelic P-value = 0.76 |
For unipolar disorder, none of these polymorphisms displayed nominally significant genotypic or allelic associations with the disease. |
Negative
|
| MDD |
NCAM1 IVS6+32T>C |
NCAM1 |
point mutation |
Fisher's exact test genotypic P-value = 0.37 , allelic P-value = 0.90 |
For unipolar disorder, none of these polymorphisms displayed nominally significant genotypic or allelic associations with the disease. |
Negative
|
| MDD |
NCAM1 2208T>G |
NCAM1 |
point mutation |
Fisher's exact test genotypic P-value = 0.54 , allelic P-value = 0.92 |
For unipolar disorder, none of these polymorphisms displayed nominally significant genotypic or allelic associations with the disease. |
Negative
|
| MDD |
NCAM1 2256 2257 insATGG |
NCAM1 |
point mutation |
Fisher's exact test genotypic P-value = 0.14 , allelic P-value = 0.14 |
For unipolar disorder, none of these polymorphisms displayed nominally significant genotypic or allelic associations with the disease. |
Negative
|

Genes reported by this study for SZ/MDD
| Disease |
Gene |
Description |
Result Category |
| MDD |
NCAM1 |
NCAM1 displayed a significant association with bipolar disorder but not with unipolar disorder. |
Negative |