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Study Report
| Comment on Study | View All Comments on Study |
| Reference | Hodgkinson, C. A., 2007 PMID: 16936715 |
|---|---|
| Citation | Hodgkinson, C. A., D. Goldman, et al. (2007). "The FEZ1 gene shows no association to schizophrenia in Caucasian or African American populations." Neuropsychopharmacology 32(1): 190-196. |
| Disease Type | Bipolar Disorder & Schizophrenia |
| Study Design | case-control |
| Study Type | Candidate-gene association study |
| Sample Size | The Caucasian sample of 521 individuals was comprised of 212 healthy controls, 178 schizophrenics, 79 bipolar disorder patients, and 58 patients with schizoaffective disorder. The African American sample, totaling 323 individuals, contained 133 healthy controls, 162 diagnosed schizophrenics, and 28 with schizoaffective disorder. |
| SNP/Region/Marker Size | 9 SNPs |
| Predominant Ethnicity | Caucasian and African American |
| Population | American |
| Sample Diagnosis | DSM-IV |
|---|---|
| Technique | genotyping |
| Statistical Method | Nonparametric testing for significance values for allelic and genotypic association was performed using a standard X2tests. Haplotype association was evaluated using the more stringent Fisher Exact Test because observed haplotype frequencies sometimes equaled zero. Deviation from Hardy-Weinberg distribution of alleles was determined using the Haploview program. Logistic regression was used to test for interaction between genotypes for each FEZ1 SNP and DISC1 risk/protective haplotypes. |
| Result Summary | No association to schizophrenia, bipolar disorder or schizoaffective disorder was found for any of the nine markers typed in these populations at the allelic or the genotypic level. Additionally no association was found in either population between specific haplotypes and any of the psychiatric disorders. Variation at the FEZ1 locus does not play a significant role in the etiology of schizophrenia, bipolar disorder or schizoaffective disorder in North American Caucasian or African American populations. |
| SNP | Related Gene(s) | Allele Change | Risk Allele | Statistical Values | Author Comments | Result Category |
|---|---|---|---|---|---|---|
| rs10893385 | FEZ1 | A/G | Allelic P-value = 0.576, genotypic P-value = 0.481 in Caucasians. | No association to bipolar disorder was found for any of the ...... No association to bipolar disorder was found for any of the nine markers typed in these populations at the allelic or the genotypic level. More... | Negative | |
| rs10893380 | FEZ1 | A/G | Allelic P-value = 0.742, genotypic P-value = 0.783 in Caucasians. | No association to bipolar disorder was found for any of the ...... No association to bipolar disorder was found for any of the nine markers typed in these populations at the allelic or the genotypic level. More... | Negative | |
| rs559668 | FEZ1 | C/T | Allelic P-value = 0.746, genotypic P-value = 0.515 in Caucasians. | No association to bipolar disorder was found for any of the ...... No association to bipolar disorder was found for any of the nine markers typed in these populations at the allelic or the genotypic level. More... | Negative | |
| rs2702009 | FEZ1 | C/T | Allelic P-value = 0.485, genotypic P-value = 0.779 in Caucasians. | No association to bipolar disorder was found for any of the ...... No association to bipolar disorder was found for any of the nine markers typed in these populations at the allelic or the genotypic level. More... | Negative | |
| rs2907228 | FEZ1 | A/T | Allelic P-value = 0.940, genotypic P-value = 0.235 in Caucasians. | No association to bipolar disorder was found for any of the ...... No association to bipolar disorder was found for any of the nine markers typed in these populations at the allelic or the genotypic level. More... | Negative | |
| rs2241514 | FEZ1 | C/T | Allelic P-value = 0.369, genotypic P-value = 0.654 in Caucasians. | No association to bipolar disorder was found for any of the ...... No association to bipolar disorder was found for any of the nine markers typed in these populations at the allelic or the genotypic level. More... | Negative | |
| rs1365410 | FEZ1 | C/G | Allelic P-value = 0.467 in Caucasians. | No association to bipolar disorder was found for any of the ...... No association to bipolar disorder was found for any of the nine markers typed in these populations at the allelic or the genotypic level. More... | Negative | |
| rs597570 | FEZ1 | A/T | Allelic P-value = 0.564, genotypic P-value = 0.848 in Caucasians. | No association to bipolar disorder was found for any of the ...... No association to bipolar disorder was found for any of the nine markers typed in these populations at the allelic or the genotypic level. More... | Negative | |
| rs12223186 | FEZ1 | A/G | Allelic P-value = 0.180, genotypic P-value = 0.367 in Caucasians. | No association to bipolar disorder was found for any of the ...... No association to bipolar disorder was found for any of the nine markers typed in these populations at the allelic or the genotypic level. More... | Negative |
| Markers | Haplotype | Related Gene(s)/Region(s) | Statistical Values | Author Comments | Result Category |
|---|---|---|---|---|---|
| rs2702009 - rs559668 - rs597570 - rs10893385 - rs1365410 - rs12223186 - rs2241514 - rs2907228 - rs10893380 | 2-2-2-2-2-2-2-2-1 | FEZ1 | P-value = 0.999 in Caucasians | No association was found in either population between specif...... No association was found in either population between specific haplotypes and any of the psychiatric disorders. More... | Negative |
| rs2702009 - rs559668 - rs597570 - rs10893385 - rs1365410 - rs12223186 - rs2241514 - rs2907228 - rs10893380 | 2-2-2-2-2-2-2-1-2 | FEZ1 | P-value = 0.525 in Caucasians | No association was found in either population between specif...... No association was found in either population between specific haplotypes and any of the psychiatric disorders. More... | Negative |
| rs2702009 - rs559668 - rs597570 - rs10893385 - rs1365410 - rs12223186 - rs2241514 - rs2907228 - rs10893380 | 1-2-2-1-2-1-1-1-2 | FEZ1 | P-value = 0.292 in Caucasians | No association was found in either population between specif...... No association was found in either population between specific haplotypes and any of the psychiatric disorders. More... | Negative |
| rs2702009 - rs559668 - rs597570 - rs10893385 - rs1365410 - rs12223186 - rs2241514 - rs2907228 - rs10893380 | 1-2-2-1-2-2-2-1-2 | FEZ1 | P-value = 0.248 in Caucasians | No association was found in either population between specif...... No association was found in either population between specific haplotypes and any of the psychiatric disorders. More... | Negative |
| rs2702009 - rs559668 - rs597570 - rs10893385 - rs1365410 - rs12223186 - rs2241514 - rs2907228 - rs10893380 | 1-1-1-2-2-2-2-1-2 | FEZ1 | P-value = 0.618 in Caucasians | No association was found in either population between specif...... No association was found in either population between specific haplotypes and any of the psychiatric disorders. More... | Negative |
| Gene | Statistical Values/Author Comments | Result Category |
|---|---|---|
| FEZ1 | No association to bipolar disorder was found for any of the nine markers typed in these populations ...... No association to bipolar disorder was found for any of the nine markers typed in these populations at the allelic or the genotypic level. Additionally no association was found in either population between specific haplotypes and any of the psychiatric disorders. Variation at the FEZ1 locus does not play a significant role in the etiology of bipolar disorder in North American Caucasian or African American populations. More... | Negative |
| Disease | SNP | Related Gene(s) | Statistical Values | Description | Result Category |
|---|---|---|---|---|---|
| SZ | rs559668 | FEZ1 | Allelic P-value = 0.732, genotypic P-value = 0.927 in Caucasians. Allelic P-value = 0.411, genotypic P-value = 0.369 in African Americans. | No association to schizophrenia was found for any of the nine markers typed in these populations at the allelic or the genotypic level. | Negative |
| SZ | rs597570 | FEZ1 | Allelic P-value = 0.586, genotypic P-value = 0.696 in Caucasians. Allelic P-value = 0.858, genotypic P-value = 0.812 in African Americans. | No association to schizophrenia was found for any of the nine markers typed in these populations at the allelic or the genotypic level. | Negative |
| SZ | rs2702009 | FEZ1 | Allelic P-value = 0.994, genotypic P-value = 0.900 in Caucasians. Allelic P-value = 0.962, genotypic P-value = 0.363 in African Americans. | No association to schizophrenia was found for any of the nine markers typed in these populations at the allelic or the genotypic level. | Negative |
| SZ | rs2907228 | FEZ1 | Allelic P-value = 0.804, genotypic P-value = 0.259 in Caucasians. Allelic P-value = 0.848, genotypic P-value = 0.982 in African Americans. | No association to schizophrenia was found for any of the nine markers typed in these populations at the allelic or the genotypic level. | Negative |
| SZ | rs1365410 | FEZ1 | Allelic P-value = 0.237 in Caucasians. Allelic P-value = 0.576, genotypic P-value = 0.531 in African Americans. | No association to schizophrenia was found for any of the nine markers typed in these populations at the allelic or the genotypic level. | Negative |
| SZ | rs2241514 | FEZ1 | Allelic P-value = 0.510, genotypic P-value = 0.788 in Caucasians. Allelic P-value = 0.911, genotypic P-value = 0.964 in African Americans. | No association to schizophrenia was found for any of the nine markers typed in these populations at the allelic or the genotypic level. | Negative |
| SZ | rs10893385 | FEZ1 | Allelic P-value = 0.625, genotypic P-value = 0.551 in Caucasians. Allelic P-value = 0.450, genotypic P-value = 0.262 in African Americans. | No association to schizophrenia was found for any of the nine markers typed in these populations at the allelic or the genotypic level. | Negative |
| SZ | rs12223186 | FEZ1 | Allelic P-value = 0.203, genotypic P-value = 0.363 in Caucasians. Allelic P-value = 0.877, genotypic P-value = 0.835 in African Americans. | No association to schizophrenia was found for any of the nine markers typed in these populations at the allelic or the genotypic level. | Negative |
| SZ | rs10893380 | FEZ1 | Allelic P-value = 0.536, genotypic P-value = 0.450 in Caucasians. Allelic P-value = 0.716, genotypic P-value = 0.924 in African Americans. | No association to schizophrenia was found for any of the nine markers typed in these populations at the allelic or the genotypic level. | Negative |
| Disease | Markers | Haplotype | Related Gene(s)/Region(s) | Statistical Values | Description | Result Category |
|---|---|---|---|---|---|---|
| SZ | rs2702009 - rs559668 - rs597570 - rs10893385 - rs1365410 - rs12223186 - rs2241514 - rs2907228 - rs10893380 | 1-1-1-2-2-2-2-1-2 | FEZ1 | P-value = 0.575 in Caucasians; P-value = 0.391 in African Americans | No association was found in either population between specific haplotypes and any of the psychiatric disorders. | Negative |
| SZ | rs2702009 - rs559668 - rs597570 - rs10893385 - rs1365410 - rs12223186 - rs2241514 - rs2907228 - rs10893380 | 2-2-2-2-2-2-2-1-2 | FEZ1 | P-value = 0.414 in Caucasians; P-value = 0.860 in African Americans | No association was found in either population between specific haplotypes and any of the psychiatric disorders. | Negative |
| SZ | rs2702009 - rs559668 - rs597570 - rs10893385 - rs1365410 - rs12223186 - rs2241514 - rs2907228 - rs10893380 | 2-2-2-2-2-2-2-2-1 | FEZ1 | P-value = 0.913 in Caucasians; P-value = 0.855 in African Americans | No association was found in either population between specific haplotypes and any of the psychiatric disorders. | Negative |
| SZ | rs2702009 - rs559668 - rs597570 - rs10893385 - rs1365410 - rs12223186 - rs2241514 - rs2907228 - rs10893380 | 1-2-2-1-2-2-2-1-2 | FEZ1 | P-value = 0.375 in Caucasians; P-value = 0.161 in African Americans | No association was found in either population between specific haplotypes and any of the psychiatric disorders. | Negative |
| SZ | rs2702009 - rs559668 - rs597570 - rs10893385 - rs1365410 - rs12223186 - rs2241514 - rs2907228 - rs10893380 | 1-2-2-1-2-1-1-1-2 | FEZ1 | P-value = 0.460 in Caucasians; P-value = 0.713 in African Americans | No association was found in either population between specific haplotypes and any of the psychiatric disorders. | Negative |
| Disease | Gene | Description | Result Category |
|---|---|---|---|
| SZ | FEZ1 | No association to schizophrenia was found for any of the nine markers typed in these populations at the allelic or the genotypic level. Additionally no association was found in either population between specific haplotypes and any of the psychiatric disorders. Variation at the FEZ1 locus does not play a significant role in the etiology of schizophrenia in North American Caucasian or African American populations. | Negative |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
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Last update: March 31, 2016


