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Study Report
| Comment on Study | View All Comments on Study |
| Reference | Karege, F.,2010 PMID: 20214684 |
|---|---|
| Citation | Karege, F., N. Perroud, et al. (2010). "Association of AKT1 gene variants and protein expression in both schizophrenia and bipolar disorder." Genes Brain Behav 9(5): 503-511. |
| Disease Type | Bipolar Disorder & Schizophrenia |
| Study Design | case-control |
| Study Type | Candidate-gene association study |
| Sample Size | 384 unrelated SCZ patients, 130 unrelated BPD patients and 165 unrelated healthy controls (HCT). |
| SNP/Region/Marker Size | 6 SNPs |
| Predominant Ethnicity | Caucasian |
| Population | Swiss and French |
| Gender | Female distribution was 45%, 48% and 39%, respectively, for SCZ, BPD and HCT. |
| Age Group | Adults : Mean age(SD) was 35(5), 41(11) and 44(13) years respectively, for SCZ, BPD and HCT. |
| Sample Diagnosis | DSM |
|---|---|
| Sample Status | All subjects were of West European origin. Patients were recruited from Switzerland (Geneva and Lausanne Hospitals) and France (University affiliated department of Creteil University). Controls were recruited from the Blood Donor Centre of the University Hospital of Geneva. Subjects were assessed by trained psychiatrists for psychiatric diagnoses using either the French version of the Diagnostic Interview for Genetics Studies (DIGS) or theMini International Neuropsychiatric Interview (MINI) (Nurnberger et al . 1994; Preisig et al . 1999; Sheehan et al . 1998). |
| Technique | genotyping |
| Statistical Method | Logistic regression under an additive genetic model adjusted by age and gender was used to investigate the association between genotypes and diagnoses (SCZ vs. controls, BPD vs. controls and all cases vs. controls).Haplotype analyses were conducted using logistic regression adjusted by the same covariates. |
| Result Summary | Of the 39 SNPs that are suitable for linkage disequilibrium (LD) studies, 14 have been analyzed by allele-specific PCR in a sample of 50 parent-proband triads with bipolar disorder. A haplotyped marker comprised of five SNPs, spanning the region between exon 9 and exon 15, was constructed for each individual, and transmission/disequilibrium test (TDT) analysis revealed this haplotype to be in linkage disequilibrium with bipolar disorder (allele-wise TDT p = 0.001, genotype-wise TDT p = 0.0004). These data replicate our previous finding of linkage to markers within and near DAT in a largely different family set, and provide further evidence for a role of DAT in bipolar disorder. |
| SNP | Related Gene(s) | Allele Change | Risk Allele | Statistical Values | Author Comments | Result Category |
|---|---|---|---|---|---|---|
| rs3730358 | AKT1 | C/T | single-locus analysis: z=0.42; P-value = 0.676 | Significant association was found in BD. Significant association was found in BD. | Positive | |
| rs3803300 | ZBTB42 AKT1 | G/A | single-locus analysis: z=1.52; P-value = 0.126 | Significant association was found in BD. Significant association was found in BD. | Positive | |
| rs2494732 | AKT1 SIVA1 | A/G | single-locus analysis: z=2.29; P-value = 0.022 | No significant association was observed in BD. No significant association was observed in BD. | Negative | |
| rs2498804 | AKT1 SIVA1 | G/T | single-locus analysis: z=1.58; P-value = 0.114 | Significant association was found in BD. Significant association was found in BD. | Positive | |
| rs1130214 | AKT1 | T/G | single-locus analysis: z=-1.03; P-value = 0.303 | Significant association was found in BD. Significant association was found in BD. | Positive | |
| rs1130233 | AKT1 | G/A | single-locus analysis: z=-0.08; P-value = 0.934 | Significant association was found in BD. Significant association was found in BD. | Positive |
| Markers | Haplotype | Related Gene(s)/Region(s) | Statistical Values | Author Comments | Result Category |
|---|---|---|---|---|---|
| rs2494732 - rs1130233 - rs3730358 | AKT1 | multi-locus association analyses:global P-value = 0.1034 | No significant association was found . No significant association was found . | Negative | |
| rs2494732 - rs1130233 | AKT1 | multi-locus association analyses:global P-value = 0.0728 | No significant association was found . No significant association was found . | Negative | |
| rs1130233 - rs3730358 - rs1130214 - rs3803300 | AKT1 | multi-locus association analyses:global P-value = 0.216 | No significant association was found . No significant association was found . | Negative | |
| rs1130233 - rs3730358 - rs1130214 | AKT1 | multi-locus association analyses:global P-value = 0.346 | No significant association was found . No significant association was found . | Negative | |
| rs2498804 - rs2494732 - rs1130233 | AKT1 | multi-locus association analyses:global P-value = 0.0366 | Significant association was found in BD. Significant association was found in BD. | Positive | |
| rs2498804 - rs2494732 | AKT1 | multi-locus association analyses:global P-value = 0.0438 | Significant association was found in BD. Significant association was found in BD. | Positive | |
| rs2494732 - rs1130233 - rs3730358 - rs1130214 - rs3803300 | AKT1 | multi-locus association analyses:global P-value = 0.026 | Significant association was found in BD. Significant association was found in BD. | Positive | |
| rs2494732 - rs1130233 - rs3730358 - rs1130214 | AKT1 | multi-locus association analyses:global P-value = 0.0275 | Significant association was found in BD. Significant association was found in BD. | Positive | |
| rs3730358 - rs1130214 | AKT1 | multi-locus association analyses:global P-value = 0.0973 | No significant association was found . No significant association was found . | Negative | |
| rs2498804 - rs2494732 - rs1130233 - rs3730358 - rs1130214 - rs3803300 | AKT1 | multi-locus association analyses:global P-value = 0.046 | Significant association was found in BD. Significant association was found in BD. | Positive | |
| rs2498804 - rs2494732 - rs1130233 - rs3730358 - rs1130214 | AKT1 | multi-locus association analyses:global P-value = 0.159 | No significant association was found . No significant association was found . | Negative | |
| rs2498804 - rs2494732 - rs1130233 - rs3730358 | AKT1 | multi-locus association analyses:global P-value = 0.0643 | Significant association was found in BD. Significant association was found in BD. | Positive | |
| rs3730358 - rs1130214 - rs3803300 | AKT1 | multi-locus association analyses:global P-value = 0.1406 | No significant association was found . No significant association was found . | Negative | |
| rs1130214 - rs3803300 | AKT1 | multi-locus association analyses:global P-value = 0.143 | No significant association was found . No significant association was found . | Negative | |
| rs1130233 - rs3730358 | AKT1 | multi-locus association analyses:global P-value = 0.597 | No significant association was found . No significant association was found . | Negative |
| Gene | Statistical Values/Author Comments | Result Category |
|---|---|---|
| AKT1 | In conclusion, our findings, by showing the involvement of the AKT1 gene in both schizophrenia and b...... In conclusion, our findings, by showing the involvement of the AKT1 gene in both schizophrenia and bipolar disorder, support the role of AKT1 in the genetics of both disorders and add support to the view that there is some genetic overlap between them. More... | Positive |
| Disease | SNP | Related Gene(s) | Statistical Values | Description | Result Category |
|---|---|---|---|---|---|
| SZ | rs1130233 | AKT1 | single-locus analysis:z=-0.45;P-value = 0.651 | No significant association was observed. | Negative |
| SZ | rs2494732 | AKT1 SIVA1 | single-locus analysis:z=1.73;P-value = 0.083 | No significant association was observed. | Negative |
| SZ | rs2498804 | AKT1 SIVA1 | single-locus analysis:z=2.47;P-value = 0.013 | Significant association was found. | Positive |
| SZ | rs3730358 | AKT1 | single-locus analysis:z=-0.30;P-value = 0.764 | No significant association was observed. | Negative |
| SZ | rs1130214 | AKT1 | single-locus analysis:z=-1.41;P-value = 0.158 | No significant association was observed. | Negative |
| SZ | rs3803300 | ZBTB42 AKT1 | single-locus analysis:z=1.80;P-value = 0.072 | No significant association was observed. | Negative |
| Disease | Markers | Haplotype | Related Gene(s)/Region(s) | Statistical Values | Description | Result Category |
|---|---|---|---|---|---|---|
| SZ | rs3730358 - rs1130214 - rs3803300 | AKT1 | multi-locus association analyses:global P-value = 0.0035 | Significant association was found in SZ. | Positive | |
| SZ | rs3730358 - rs1130214 | AKT1 | multi-locus association analyses:global P-value = 0.0013 | Significant association was found in SZ. | Positive | |
| SZ | rs2498804 - rs2494732 - rs1130233 - rs3730358 - rs1130214 - rs3803300 | AKT1 | multi-locus association analyses:global P-value = 0.0026 | Significant association was found in SZ. | Positive | |
| SZ | rs2498804 - rs2494732 - rs1130233 - rs3730358 - rs1130214 | AKT1 | multi-locus association analyses:global P-value = 0.0048 | Significant association was found in SZ. | Positive | |
| SZ | rs2498804 - rs2494732 - rs1130233 - rs3730358 | AKT1 | multi-locus association analyses:global P-value = 0.197 | No significant association was observed in SZ. | Negative | |
| SZ | rs2498804 - rs2494732 - rs1130233 | AKT1 | multi-locus association analyses:global P-value = 0.395 | No significant association was observed in SZ. | Negative | |
| SZ | rs1130214 - rs3803300 | AKT1 | multi-locus association analyses:global P-value = 0.605 | No significant association was observed in SZ. | Negative | |
| SZ | rs2494732 - rs1130233 - rs3730358 - rs1130214 - rs3803300 | AKT1 | multi-locus association analyses:global P-value = 0.000593 | Significant association was found in SZ. | Positive | |
| SZ | rs2498804 - rs2494732 | AKT1 | multi-locus association analyses:global P-value = 0.0861 | No significant association was observed in SZ. | Negative | |
| SZ | rs2494732 - rs1130233 - rs3730358 | AKT1 | multi-locus association analyses:global P-value = 0.0147 | Significant association was found in SZ. | Positive | |
| SZ | rs2494732 - rs1130233 - rs3730358 - rs1130214 | AKT1 | multi-locus association analyses:global P-value = 0.000211 | Significant association was found in SZ. | Positive | |
| SZ | rs1130233 - rs3730358 - rs1130214 - rs3803300 | AKT1 | multi-locus association analyses:global P-value = 0.0018 | Significant association was found in SZ. | Positive | |
| SZ | rs2494732 - rs1130233 | AKT1 | multi-locus association analyses:global P-value = 0.0394 | Significant association was found in SZ. | Positive | |
| SZ | rs1130233 - rs3730358 | AKT1 | multi-locus association analyses:global P-value = 0.0247 | Significant association was found in SZ. | Positive | |
| SZ | rs1130233 - rs3730358 - rs1130214 | AKT1 | multi-locus association analyses:global P-value = 0.0021 | Significant association was found in SZ. | Positive |
| Disease | Gene | Description | Result Category |
|---|---|---|---|
| SZ | AKT1 | In conclusion, our findings, by showing the involvement of the AKT1 gene in both schizophrenia and bipolar disorder, support the role of AKT1 in the genetics of both disorders and add support to the view that there is some genetic overlap between them. | Positive |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
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Last update: March 31, 2016


