BDgene

Study Report

Basic Info
Reference
Citation Tesli, M., P. Koefoed, et al. (2011). "Association analysis of ANK3 gene variants in nordic bipolar disorder and schizophrenia case-control samples." Am J Med Genet B Neuropsychiatr Genet 156B(8): 969-974.
Disease Type Bipolar Disorder & Schizophrenia
Study Design case-control
Study Type Candidate-gene association study
Sample Size Scandinavian samples(854 BD patients,1,073 SZ patients and 2,919 healthy controls) and Icelandic sample (435 BD cases, 651 SZ cases, and 11,491 healthy controls)
SNP/Region/Marker Size 3 SNPs
Predominant Ethnicity Caucasian
Population Norwegian,Danish and Icelander
Gender Female proportion:58% in BD patients,41% in SZ patients,46% in control for Denmark sample;58% in BD patients,44% in SZ patients,50% in control for Norway sample;38% in SZ patients,38% in control for Sweden sample(SCOPE sample)
Age Group Adults : Mean age(SD)(year):53.1 (15.0) in BD patients,47.8 (12.3) in SZ patients,46.0 (11.8) in control for Denmark sample;41.2 (13.1) in BD patients,37.2 (10.7) in SZ patients,39.2 (10.4) in control for Norway sample;58.1(15.2) in SZ patients,54.3(10.4) in control for Sweden sample(SCOPE sample)

Detail Info

Genetic factors reported by this study for BD
SNPs reported by this study for BD (count: 3)

Genes reported by this study for BD (count: 1)

Genetic factors reported by this study for SZ and/or MDD
SNPs reported by this study for SZ/MDD
Disease SNP Related Gene(s) Statistical Values Description Result Category
SZ rs9804190 ANK3 SCOPE sample:MAF=0.21, Cochrane-Mantel-Haenszel test P-value = 0.88, Bonferroni corrected P-value = 1, OR (95%CI)=0.99(0.87-1.13);Icelandic sample:MAF(affected)=0.23, MAF(unaffected)=0.22, allelic P-value = 0.5, Bonferroni corrected P-value = 1, OR (95%CI)=1.05(0.92-1.20) No significant association was observed. Negative
SZ rs1938526 ANK3 SCOPE sample:MAF=0.073, Cochrane-Mantel-Haenszel test P-value = 0.95, Bonferroni corrected P-value = 1, OR (95%CI)=0.99(0.81-1.22);Icelandic sample:MAF(affected)=0.06, MAF(unaffected)=0.058, allelic P-value = 0.32, Bonferroni corrected P-value = 0.96, OR (95%CI)=1.03(0.81-1.31) No significant association was observed. Negative
SZ rs10994336 ANK3 SCOPE sample:MAF=0.068, Cochrane-Mantel-Haenszel test P-value = 0.64, Bonferroni corrected P-value = 1, OR (95%CI)=1.05(0.86-1.29);Icelandic sample:MAF(affected)=0.055, MAF(unaffected)=0.05, allelic P-value = 0.56, Bonferroni corrected P-value = 1, OR (95%CI)=1.08(0.83-1.39) No significant association was observed. Negative

Genes reported by this study for SZ/MDD
Disease Gene Description Result Category
SZ ANK3 None of the SNPs in ANK3 were significantly associated with SZ in any of the samples Negative