BDgene

SNP Report

Basic Info
Name rs9975740 dbSNP Ensembl
Location chr21:42200375 - 42200375(1)
Variant Alleles T/A
Ancestral Allele A
Minor Allele A
Minor Allele Frequence 0.211861
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000398457, ENST00000462050); non_coding_transcript_variant(ENST00000462050)
No. of Studies 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Liu, X., 2016 A/T P-value=4.4E-07, OR=2.00 in the BD+ED vs. BDO analysis P-value=4.4E-07, OR=2.00 in the BD+ED vs. BDO analysis The ABCG1 gene on chromosome 21q22.3 was most prominent in t...... The ABCG1 gene on chromosome 21q22.3 was most prominent in the BD+ED vs. BDO analysis (peak p=4.3E-7). More... Trend

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
ABCG1 ATP-binding cassette, sub-family G (WHITE), member 1 21q22.3 1(0/1/0)

SNPs in LD with rs9975740 (count: 0) View in gBrowse (chr21:42200375..42200375 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)