SNP Report

Basic Info

Name	rs9901910 dbSNP Ensembl
Location	chr17:82240131 - 82240131(1)
Variant Alleles	G/C
Ancestral Allele	C
Minor Allele	G
Minor Allele Frequence	0.113019
Functional Annotation	downstream_gene_variant; intron_variant; NMD_transcript_variant; upstream_gene_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000269361, ENST00000314028, ENST00000392334, ENST00000392339, ENST00000392341, ENST00000577578, ENST00000577650, ENST00000578501, ENST00000578522, ENST00000578574, ENST00000578684, ENST00000578810, ENST00000579572, ENST00000580098, ENST00000580189, ENST00000580784, ENST00000581241, ENST00000581287, ENST00000581642, ENST00000581737, ENST00000582715, ENST00000582743, ENST00000582946, ENST00000583237, ENST00000584377, ENST00000584689, ENST00000584781, ENST00000584913, ENST00000616675, ENST00000617373, ENST00000619321); intron_variant(ENST00000398519, ENST00000583025, ENST00000584672); NMD_transcript_variant(ENST00000584672); upstream_gene_variant(ENST00000620937)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	YES
Overlap with MDD?	YES

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Matsunaga, S.,2012	G/C		Chi square test:MAF = 0.25,P-value = 0.26,OR = 0.93 Chi square test:MAF = 0.25,P-value = 0.26,OR = 0.93	No significant association was observed. No significant association was observed.	Negative

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
CSNK1D	casein kinase 1, delta	17q25	4(2/2/0)
SLC16A3	solute carrier family 16 (monocarboxylate transporter), member 3	17q25.3	Mapped by Literature SNP

SNPs in LD with rs9901910 (count: 0) View in gBrowse (chr17:82240131..82240131 )

Overlap with SZ from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
Matsunaga, S.,2012	Chi square test:MAF = 0.26,P-value = 0.48,OR = 0.95	No significant association was observed.	Negative

Overlap with MDD from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
Matsunaga, S.,2012	Chi square test:MAF = 0.29,P-value = 0.14,OR = 1.14	No significant association was observed.	Negative