SNP Report

Basic Info

Name	rs989713 dbSNP Ensembl
Location	chr6:37681935 - 37681935(1)
Variant Alleles	C/T
Ancestral Allele	T
Minor Allele	C
Minor Allele Frequence	0.113419
Functional Annotation	intron_variant.
Consequence to Transcript	intron_variant(ENST00000434837, ENST00000505425, ENST00000515437)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	YES
Overlap with MDD?	YES

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Li, J.,2011(a)	C/T		Single SNP analyses: allele, P-value = 0.6927, OR[95%CI]=0.9...... Single SNP analyses: allele, P-value = 0.6927, OR[95%CI]=0.9633[0.8002, 1.1597], genotype, P-value = 0.2861 for BP More...	No significant association was observed. No significant association was observed.	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
MDGA1	MAM domain containing glycosylphosphatidylinositol anchor 1	6p21	1(1/0/0)

SNPs in LD with rs989713 (count: 5) View in gBrowse (chr6:37679868..37693265 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs9394449	intron_variant	1.0[CHB]; 1.0[JPT]
rs6458011	intron_variant	0.802[CHD]; 1.0[JPT]
rs9394450	intron_variant	0.904[CHB]; 1.0[JPT]
rs6458012	intron_variant	1.0[JPT]
rs876796	intron_variant	1.0[CHB]; 1.0[JPT]

Overlap with SZ from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
Li, J.,2011(a)	Single SNP analyses:allele, P-value = 0.2801, OR[95%CI]=1.1064[0.9209, 1.3294], genotype, P-value = 0.0969 for SZ	No significant association was observed.	Negative

Overlap with MDD from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
Li, J.,2011(a)	Single SNP analyses:allele, P-value = 0.0748, OR[95%CI]=1.1775[0.9837, 1.4094], genotype, P-value = 0.1617 for MDD	No significant association was observed.	Negative