SNP Report

Basic Info

Name	rs9896752 dbSNP Ensembl
Location	chrCHR_HSCHR17_2_CTG5:45864452 - 45864452(1)
Variant Alleles	T/C
Ancestral Allele	T
Minor Allele	C
Minor Allele Frequence	0.123203
Functional Annotation	intron_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000579244, ENST00000579599, ENST00000634876); non_coding_transcript_variant(ENST00000579244, ENST00000579599, ENST00000634876, ENST00000628274, ENST00000629948, ENST00000628274, ENST00000629948, ENST00000632082, ENST00000633517, ENST00000632082, ENST00000633517)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Ceulemans, S.,2011	C/T		Single SNP analyses: Permuted P-value = 0.1442, Odds Ratio=0...... Single SNP analyses: Permuted P-value = 0.1442, Odds Ratio=0.7368 More...	No significant association was observed. No significant association was observed.	Negative

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
MAPT-AS1	MAPT antisense RNA 1	17q21.31	Mapped by Literature SNP
CRHR1	corticotropin releasing hormone receptor 1	17q21.31	4(2/2/0)

SNPs in LD with rs9896752 (count: 1) View in gBrowse (chrCHR_HSCHR17_2_CTG5:45863948..45864452 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs9890016		intron_variant; non_coding_transcript_variant	1.0[CEU]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)