BDgene

SNP Report

Basic Info
Name rs988713 dbSNP Ensembl
Location chr8:20183790 - 20183790(1)
Variant Alleles C/T
Ancestral Allele T
Minor Allele C
Minor Allele Frequence 0.257788
Functional Annotation upstream_gene_variant.
Consequence to Transcript upstream_gene_variant(ENST00000265808, ENST00000276373, ENST00000381608, ENST00000437980, ENST00000440926, ENST00000517776, ENST00000519026, ENST00000522513)
No. of Studies 2 (Positive: 1; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 2)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Yosifova, A.,2009 C/T Allelic association: P-value = 0.42 Allelic association: P-value = 0.42 No significant association was observed No significant association was observed Negative
Lohoff, F. W., 2006 A/G genotypic P-value = 0.015, allelic P-value = 0.005 for BPI ;...... genotypic P-value = 0.015, allelic P-value = 0.005 for BPI ; genotypic P-value = 0.085, allelic P-value = 0.029 for BP I psychosis More... This SNP is associated with the disease. This SNP is associated with the disease. Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
SLC18A1 solute carrier family 18 (vesicular monoamine transporter), member 1 8p21.3 3(2/1/0)

SNPs in LD with rs988713 (count: 7) View in gBrowse (chr8:20171753..20183790 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 7)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016