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SNP Report
Name | rs9804190 dbSNP Ensembl | ||
---|---|---|---|
Location | chr10:60080073 - 60080073(1) | ||
Variant Alleles | C/T | ||
Ancestral Allele | T | ||
Minor Allele | T | ||
Minor Allele Frequence | 0.257788 | ||
Functional Annotation | downstream_gene_variant; intron_variant; upstream_gene_variant. | ||
Consequence to Transcript | downstream_gene_variant(ENST00000508449, ENST00000622427); intron_variant(ENST00000280772, ENST00000355288, ENST00000373820, ENST00000373827, ENST00000503366, ENST00000511043, ENST00000610321, ENST00000616444); upstream_gene_variant(ENST00000365320) | ||
No. of Studies | 6 (Positive: 2; Negative: 4; Trend: 0) | ||
Source | Literature | ||
Overlap with SZ? | YES | ||
Overlap with MDD? | NO |
Reference | Statistical Result | Description | Result Category |
---|---|---|---|
Gella, A.,2011 | Genotype association:CC P-value = 0.949, CT P-value = 0.674, TT P-value = 0.284 for SZ. | No significant association was observed. | Negative |
Tesli, M.,2011 | SCOPE sample:MAF=0.21, Cochrane-Mantel-Haenszel test P-value = 0.88, Bonferroni corrected P-value = 1, OR (95%CI)=0.99(0.87-1.13);Icelandic sample:MAF(affected)=0.23, MAF(unaffected)=0.22, allelic P-value = 0.5, Bonferroni corrected P-value = 1, OR (95%CI)=1.05(0.92-1.20) | No significant association was observed. | Negative |