BDgene

SNP Report

Basic Info
Name rs973002 dbSNP Ensembl
Location chr7:30659288 - 30659288(1)
Variant Alleles G/A
Ancestral Allele A
Minor Allele G
Minor Allele Frequence 0.216853
Functional Annotation intron_variant; NMD_transcript_variant.
Consequence to Transcript intron_variant(ENST00000341843, ENST00000348438, ENST00000452278, ENST00000471646, ENST00000506074); NMD_transcript_variant(ENST00000452278)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Ceulemans, S.,2011 G/A Single SNP analyses: Permuted P-value = 0.1264, Odds Ratio=0...... Single SNP analyses: Permuted P-value = 0.1264, Odds Ratio=0.7976 More... No significant association was observed. No significant association was observed. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
CRHR2 corticotropin releasing hormone receptor 2 7p14.3 3(2/1/0)

SNPs in LD with rs973002 (count: 12) View in gBrowse (chr7:30505662..30659288 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 12)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
To view this website normally, please make sure to allow Flash to run from the local filesystem in the security settings panel.
Last update: March 31, 2016