SNP Report

Basic Info

Name	rs9658100 dbSNP Ensembl
Location	chr6:35388863 - 35388863(1)
Variant Alleles	T/G
Ancestral Allele	G
Minor Allele	G
Minor Allele Frequence	0.239816
Functional Annotation	intron_variant.
Consequence to Transcript	intron_variant(ENST00000311565, ENST00000337400, ENST00000360694, ENST00000418635, ENST00000448077)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Zandi, P. P, 2008 (a)	T/G		Allelic P-value = 0.11 Allelic P-value = 0.11		Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
PPARD	peroxisome proliferator-activated receptor delta	6p21.2	1(1/0/0)

SNPs in LD with rs9658100 (count: 8) View in gBrowse (chr6:35362253..35388863 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs6901410	intron_variant	1.0[CEU]; 1.0[TSI]
rs6919334	intron_variant	1.0[CEU]; 1.0[TSI]
rs9658083	intron_variant	1.0[CEU]
rs9470007	intron_variant	1.0[CEU]; 1.0[TSI]
rs9296148	intron_variant	1.0[CEU]; 1.0[TSI]
rs7739752	intron_variant	1.0[CEU]; 1.0[TSI]
rs6922548	intron_variant	1.0[CEU]; 1.0[TSI]
rs6902123	intron_variant	1.0[CEU]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)