SNP Report

Basic Info

Name	rs9567747 dbSNP Ensembl
Location	chr13:46886479 - 46886479(1)
Variant Alleles	A/G
Ancestral Allele	A
Minor Allele	G
Minor Allele Frequence	0.20627
Functional Annotation	intron_variant.
Consequence to Transcript	intron_variant(ENST00000378688, ENST00000542664, ENST00000543956)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Xiang, B., 2013	G/A		P-value=5.53E-05, OR=1.55, X²=16.26, Bonf P-value...... P-value=5.53E-05, OR=1.55, X²=16.26, Bonf P-value=0.002 More...	Analysis for effects of individual SNPs revealed that 2/21 S...... Analysis for effects of individual SNPs revealed that 2/21 SNPs (rs1475196 and rs9567747) in the HTR2A gene and 1/23 SNPs (rs17110566) in the TPH2 gene showed a statistically significant association with BP-I both genotype-wise and allele-wise. More...	Positive

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
HTR2A	5-hydroxytryptamine (serotonin) receptor 2A, G protein-coupled	13q14-q21	22(7/15/0)

SNPs in LD with rs9567747 (count: 12) View in gBrowse (chr13:46881916..46929722 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs927544	intron_variant	0.803[JPT]
rs2183057		0.846[JPT]
rs9534523		0.85[JPT]
rs4942587	intron_variant	1.0[CHB]; 1.0[JPT]
rs4941573	downstream_gene_variant; intron_variant	0.903[JPT]
rs7324343	intron_variant	0.866[JPT]
rs9534511	downstream_gene_variant; intron_variant	0.905[CHB]; 1.0[JPT]
rs4942589		0.814[JPT]
rs2296973	downstream_gene_variant; intron_variant	1.0[CHB]; 1.0[JPT]
rs1328683	intron_variant	1.0[CHB]; 1.0[JPT]
rs1410660		0.85[JPT]
rs2070037	downstream_gene_variant; intron_variant	1.0[CHB]; 0.95[JPT]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)