BDgene

SNP Report

Basic Info
Name rs9556964 dbSNP Ensembl
Location chr13:98507052 - 98507052(1)
Variant Alleles T/C
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.375
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000376547, ENST00000397517, ENST00000444574, ENST00000481288, ENST00000491878, ENST00000539966); non_coding_transcript_variant(ENST00000481288, ENST00000491878)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Yosifova, A.,2009 C/T Allelic association: P-value = 0.64 Allelic association: P-value = 0.64 No significant association was observed No significant association was observed Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
STK24 serine/threonine kinase 24 13q31.2-q32.3 2(1/1/0)

SNPs in LD with rs9556964 (count: 3) View in gBrowse (chr13:98507052..98514866 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 3)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)