BDgene

SNP Report

Basic Info
Name rs9551988 dbSNP Ensembl
Location chr13:19719577 - 19719577(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.0964457
Functional Annotation intron_variant; NMD_transcript_variant.
Consequence to Transcript intron_variant(ENST00000338910, ENST00000471658, ENST00000492741, ENST00000619300, ENST00000635562); NMD_transcript_variant(ENST00000471658, ENST00000492741, ENST00000635562)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Ross, K. A.,2011 C/T Using the stringent filter, two-sided chi-squared test, geno...... Using the stringent filter, two-sided chi-squared test, genotype P-value = 0.0063 More... No significant association was observed in BD. No significant association was observed in BD. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
PSPC1 paraspeckle component 1 13q11 1(0/1/0)

SNPs in LD with rs9551988 (count: 0) View in gBrowse (chr13:19719577..19719577 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)