BDgene

SNP Report

Basic Info
Name rs9517549 dbSNP Ensembl
Location chr13:99022126 - 99022126(1)
Variant Alleles T/A
Ancestral Allele A
Minor Allele T
Minor Allele Frequence 0.42512
Functional Annotation intron_variant; NMD_transcript_variant; upstream_gene_variant.
Consequence to Transcript intron_variant(ENST00000427887, ENST00000479769); NMD_transcript_variant(ENST00000479769); upstream_gene_variant(ENST00000384568)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Detera-Wadleigh, S. D., 2007 FBAT-e P-value = 0.0904 in NIMH1-2, FBAT-e P-value = 0.1871 ...... FBAT-e P-value = 0.0904 in NIMH1-2, FBAT-e P-value = 0.1871 in NIMH3, FBAT-e P-value = 0.66 in NIMH4 More... no significant over-transmission of any alleles was detected no significant over-transmission of any alleles was detected Negative

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
RNU6-83P RNA, U6 small nuclear 83, pseudogene 13q32.3 Mapped by Literature SNP
DOCK9 dedicator of cytokinesis 9 13q32.3 1(1/0/0)

SNPs in LD with rs9517549 (count: 0) View in gBrowse (chr13:99022126..99022126 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)