BDgene

SNP Report

Basic Info
Name rs9517313 dbSNP Ensembl
Location chr13:98453638 - 98453638(1)
Variant Alleles G/C
Ancestral Allele G
Minor Allele C
Minor Allele Frequence 0.244609
Functional Annotation 3_prime_UTR_variant; downstream_gene_variant; intron_variant.
Consequence to Transcript 3_prime_UTR_variant(ENST00000319562); downstream_gene_variant(ENST00000418038, ENST00000444574, ENST00000595437, ENST00000597596, ENST00000600380, ENST00000627049); intron_variant(ENST00000376547, ENST00000376554, ENST00000397517, ENST00000539966)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Yosifova, A.,2009 C/G Allelic association: P-value = 0.091 Allelic association: P-value = 0.091 No significant association was observed No significant association was observed Negative

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
FARP1 FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived) 13q32.2 1(1/0/0)
STK24 serine/threonine kinase 24 13q31.2-q32.3 2(1/1/0)

SNPs in LD with rs9517313 (count: 1) View in gBrowse (chr13:98453638..98462787 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 1)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)