BDgene

SNP Report

Basic Info
Name rs942519 dbSNP Ensembl
Location chr9:114406753 - 114406753(1)
Variant Alleles A/G
Ancestral Allele G
Minor Allele G
Minor Allele Frequence 0.481629
Functional Annotation missense_variant.
Polyphen Annotation: benign(ENST00000265134, ENST00000362057, ENST00000374059)
SIFT Annotation: tolerated(ENST00000265134, ENST00000362057, ENST00000374059)
Consequence to Transcript missense_variant(ENST00000265134, ENST00000362057, ENST00000374059)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Takata, A.,2011(a) A/G Fisher's exact test: allele P-value = 0.8747, genotype P-val...... Fisher's exact test: allele P-value = 0.8747, genotype P-value = 0.8363 More... No significant association was observed in BD. No significant association was observed in BD. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
DFNB31 deafness, autosomal recessive 31 9q32 3(2/1/0)

SNPs in LD with rs942519 (count: 14) View in gBrowse (chr9:114396217..114414026 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 14)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)