SNP Report

Basic Info

Name	rs939348 dbSNP Ensembl
Location	chr17:40075600 - 40075600(1)
Variant Alleles	T/C
Ancestral Allele	C
Minor Allele	T
Minor Allele Frequence	0.357228
Functional Annotation	intron_variant.
Consequence to Transcript	intron_variant(ENST00000264637, ENST00000394121, ENST00000450525, ENST00000546243, ENST00000577288, ENST00000577486, ENST00000578218, ENST00000584985, ENST00000585047)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Kripke, D. F.,2009	T/C		TDT: In BP: OR=0.787, CHISQ=6.091, P-value = 0.0136, empiric...... TDT: In BP: OR=0.787, CHISQ=6.091, P-value = 0.0136, empirical P-value = 0.0224, corrected empirical P-value = 0.8729 More...	Significant association was observed in the BP group. Significant association was observed in the BP group.	Positive

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
THRA	thyroid hormone receptor, alpha	17q21.1	1(1/0/0)

SNPs in LD with rs939348 (count: 1) View in gBrowse (chr17:40075123..40075600 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs1879265		intron_variant	1.0[CEU]; 0.94[TSI]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)