BDgene

SNP Report

Basic Info
Name rs9380525 dbSNP Ensembl
Location chr6:35665261 - 35665261(1)
Variant Alleles G/C
Ancestral Allele G
Minor Allele G
Minor Allele Frequence 0.36222
Functional Annotation intron_variant; upstream_gene_variant.
Consequence to Transcript intron_variant(ENST00000357266, ENST00000536438, ENST00000539068, ENST00000542713); upstream_gene_variant(ENST00000583739)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Willour, V. L.,2009 C/G FBAT: Additive model: major allele P-value = 0.110, minor al...... FBAT: Additive model: major allele P-value = 0.110, minor allele P-value = 0.110; Dominant model: major allele P-value = 0.044, minor allele P-value = 0.496; Genotypic association: TDT P-value = 0.09 More... It showed a significant overtransmission under the dominant ...... It showed a significant overtransmission under the dominant model. More... Positive

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
FKBP5 FK506 binding protein 5 6p21.31 5(1/4/0)
MIR5690 microRNA 5690 6 Mapped by Literature SNP

SNPs in LD with rs9380525 (count: 0) View in gBrowse (chr6:35665261..35665261 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)