SNP Report

Basic Info

Name	rs9311 dbSNP Ensembl
Location	chr3:196554337 - 196554337(1)
Variant Alleles	T/C
Ancestral Allele	T
Minor Allele	C
Minor Allele Frequence	0.32488
Functional Annotation	synonymous_variant.
Consequence to Transcript	synonymous_variant(ENST00000332629, ENST00000429115, ENST00000433160)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Schosser, A.,2011			chi-square (X²) test: genotype, X²=1.8...... chi-square (X²) test: genotype, X²=1.872, P-value = 0.392; allele, X²=0.09, P-value = 0.76 More...	No significant association was observed. No significant association was observed.	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
WDR53	WD repeat domain 53	3q29	1(0/1/0)

SNPs in LD with rs9311 (count: 16) View in gBrowse (chr3:196518732..196561906 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs9813420	downstream_gene_variant; intron_variant	1.0[CEU]
rs6799694	downstream_gene_variant	0.84[CEU]
rs9817377	downstream_gene_variant; intron_variant	0.959[CEU]; 0.909[TSI]
rs12495687	upstream_gene_variant	0.84[CEU]
rs2880030	downstream_gene_variant	1.0[CEU]; 0.977[TSI]
rs9848622	upstream_gene_variant	0.84[CEU]
rs6583318	downstream_gene_variant	0.84[CEU]
rs9828786	intron_variant	1.0[CEU]
rs12491127	upstream_gene_variant	0.84[CEU]
rs11707537	downstream_gene_variant; intron_variant	0.84[CEU]; 0.931[TSI]
rs9814342		1.0[CEU]; 0.954[TSI]
rs11185544	upstream_gene_variant	0.802[CEU]
rs9831225		1.0[CEU]; 0.954[TSI]
rs9647412	downstream_gene_variant	1.0[CEU]; 0.977[TSI]
rs9839388	upstream_gene_variant	0.84[CEU]
rs2086891		0.802[CEU]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)