BDgene

SNP Report

Basic Info
Name rs916005 dbSNP Ensembl
Location chr22:50605815 - 50605815(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.0125799
Functional Annotation intron_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript intron_variant(ENST00000008876, ENST00000329492); non_coding_transcript_variant(ENST00000008876); upstream_gene_variant(ENST00000463053)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? YES
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Severinsen, J. E., 2006 (b) G/A P-value = 0.8427 in BD, P-value = 1 in BD and SZ P-value = 0.8427 in BD, P-value = 1 in BD and SZ Negative

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
MAPK8IP2 mitogen-activated protein kinase 8 interacting protein 2 22q13.33 1(0/1/0)
CHKB choline kinase beta 22q13.33 Mapped by Literature SNP

SNPs in LD with rs916005 (count: 0) View in gBrowse (chr22:50605815..50605815 )

Overlap with SZ from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Severinsen, J. E., 2006 (b) P-value = 0.8482 in SZ, P-value = 1 in BD and SZ Negative

Overlap with MDD from cross-disorder studies (count: 0)