SNP Report

Basic Info

Name	rs871044 dbSNP Ensembl
Location	chr18:11907375 - 11907375(1)
Variant Alleles	A/G
Ancestral Allele	A
Minor Allele	A
Minor Allele Frequence	0.460264
Functional Annotation	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000590055); intron_variant(ENST00000309976, ENST00000317235, ENST00000317251, ENST00000344987, ENST00000496196, ENST00000586204, ENST00000586844, ENST00000587381, ENST00000588072, ENST00000588103, ENST00000588186, ENST00000588191, ENST00000588939, ENST00000589267, ENST00000589731, ENST00000589829, ENST00000590302, ENST00000590501, ENST00000591667, ENST00000592977, ENST00000593001); NMD_transcript_variant(ENST00000317251, ENST00000496196); non_coding_transcript_variant(ENST00000586204, ENST00000587381, ENST00000588939, ENST00000589731, ENST00000589829, ENST00000590302, ENST00000591667); upstream_gene_variant(ENST00000589859, ENST00000609611)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Lohoff, F. W., 2010	G/A		genotype test P-value = 0.498, allele test P-value = 0.704 genotype test P-value = 0.498, allele test P-value = 0.704		Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
MPPE1	metallophosphoesterase 1	18p11.21	2(2/0/0)

SNPs in LD with rs871044 (count: 0) View in gBrowse (chr18:11907375..11907375 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)